Sandbox 85: Difference between revisions

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New page: Please do NOT make changes to this Sandbox until after December 15, 2009. Sandboxes 85-115 are reserved until then for use by the Biochemistry 451 class at Capital University taught by Pro...
 
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Please do NOT make changes to this Sandbox until after December 15, 2009. Sandboxes 85-115 are reserved until then for use by the Biochemistry 451 class at Capital University taught by Prof. Jens Hemmingsen (jhemming@capital.edu).
<table style="background-color:#ffffc0" cellpadding="8" width="95%" border="0"><tr><td>Please do NOT make changes to this Sandbox until after December 15, 2009. Sandboxes 85-115 are reserved until then for use by the Biochemistry 451 class at Capital University taught by Prof. Jens Hemmingsen (jhemming@capital.edu).</td></tr>


Replace the PDB id (use lowercase!) after the STRUCTURE_ and after PDB= to load
This is '''myoglobin'''.
and display another structure.


{{STRUCTURE_3cin |  PDB=3cin |  SCENE= }}
{{STRUCTURE_1a6m |  PDB=1a6m |  SCENE=Sandbox_85/Myoglobin_overview/3 }}
<scene name='Sandbox_85/Myoglobin_overview/3'>Original View</scene><br>
<scene name='Sandbox_85/Secondary_structure/2'>Secondary Structure</scene><br>
<scene name='Sandbox_85/Heme_closeup/1'>Heme closeup</scene><br>
<scene name='Sandbox_85/Heme_closeup/2'>Iron ligands</scene><br>
<scene name='Sandbox_85/Helixes/1'>Pink Helixes</scene><br>
<scene name='Sandbox_85/Heme_zoomed/1'>Heme Only</scene><br>
<scene name='Sandbox_85/Plx_4032/1'>JD needs this</scene>
<scene name='3og7/Superposition/5'>Overall superposition of LepA and EF-G.</scene> <small>Note that the individual domains of <font color = 'lime'>'''LepA'''</font> and <font color = 'mediumpurple'>'''EF-G'''</font>, such as III V, superimpose much better when done separately (shown in [http://www.pnas.org/content/105/12/4673/F2.expansion.html figure 2] of [http://www.pnas.org/content/105/12/4673.long the paper] describing the structure).</small>
 
 
<applet load='1a6m' size='500' color='white' frame='true' align='right' caption='testcaption' />

Latest revision as of 05:11, 5 October 2010

This is myoglobin.


Please do NOT make changes to this Sandbox until after December 15, 2009. Sandboxes 85-115 are reserved until then for use by the Biochemistry 451 class at Capital University taught by Prof. Jens Hemmingsen (jhemming@capital.edu).

PDB ID 1a6m

Drag the structure with the mouse to rotate
1a6m, resolution 1.00Å ()
Ligands: , ,
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml








Note that the individual domains of LepA and EF-G, such as III V, superimpose much better when done separately (shown in figure 2 of the paper describing the structure).


testcaption

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Student, Jens Hemmingsen, J.D. Woodruff