Believe It or Not!: Difference between revisions
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'''The most common ...''' | '''The most common ...''' | ||
* The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in | * The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 43,110 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=562 Escherichia coli], present in 9,286 PDB structures. | ||
* The most common Ligand is '''GOL''', present in | * The most common Ligand is '''GOL''', present in 23,369 PDB structures (excluding SO4) | ||
* The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | * The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | ||
'''The most conspicuous ...''' | '''The most conspicuous ...''' | ||
* The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over | * The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 232,420 ( 0.00%) | ||
* The most popular experiment type is X-ray Diffraction used on | * The most popular experiment type is X-ray Diffraction used on 192,152 structures over 232,420 (82.67%) | ||
* The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | * The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | ||
* The PDB structure with the most models is [[2hyn]], with 184 models. | * The PDB structure with the most models is [[2hyn]], with 184 models. | ||
* The PDB | * The PDB structures with the most related structures are [[4b2c]], [[4b2b]], [[4b1t]] with 287 related structures each. | ||
* The PDB structure with the most chains is [[4v99]] with 480 chains. | * The PDB structure with the most chains is [[4v99]] with 480 chains. | ||
* The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | * The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | ||
* The PDB structures with the shortest chain (greater than one residue) are [[1cwp]], [[1d53]], [[1n38]], [[1vy6]], [[1xam]], [[3u2e]], [[4dy8]], [[4e60]], [[4ejt]], [[4g7o]], [[4jzu]], [[4jzv]], [[4lq3]], [[4nia]], [[4nku]], [[4ohy]], [[4oi0]], [[4oi1]], [[4oq8]], [[4oq9]], [[4pei]], [[4tzd]], [[4wti]], [[4wtj]], [[4wtk]], [[4wtl]], [[4wtm]], [[4x4n]], [[4x4r]], [[4x4t]], [[4x4t]], [[4x4u]], [[5tgm]] with 2 residues each. | * The PDB structures with the shortest chain (greater than one residue) are [[1b2m]], [[1cwp]], [[1d53]], [[1ddl]], [[1dn8]], [[1ehl]], [[1f0v]], [[1i8m]], [[1ijs]], [[1kqs]], [[1lgc]], [[1m6a]], [[1n38]], [[1oup]], [[1pv4]], [[1pvo]], [[1q81]], [[1q82]], [[1rnb]], [[1vy6]], [[1xam]], [[279d]], [[2d7g]], [[2dwl]], [[2dwm]], [[2dwn]], [[2ht1]], [[2htt]], [[2ok0]], [[2pjr]], [[2vrt]], [[3er9]], [[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]], [[3j5l]], [[3j9m]], [[3ngz]], [[3nma]], [[3ra4]], [[3ra9]], [[3rec]], [[3u2e]], [[3ucu]], [[3ucz]], [[3ud3]], [[3ud4]], [[3va0]], [[4a3g]], [[4a3j]], [[4a8k]], [[4afy]], [[4dy8]], [[4e60]], [[4ejt]], [[4g7o]], [[4jzu]], [[4jzv]], [[4lq3]], [[4nia]], [[4nku]], [[4ohy]], [[4oi0]], [[4oi1]], [[4oq8]], [[4oq9]], [[4pei]], [[4tzd]], [[4wti]], [[4wtj]], [[4wtk]], [[4wtl]], [[4wtm]], [[4x4n]], [[4x4r]], [[4x4t]], [[4x4t]], [[4x4u]], [[5f6c]], [[5jju]], [[5k77]], [[5kal]], [[5mmi]], [[5tgm]], [[5uh6]], [[5uh9]] with 2 residues each. | ||
* The PDB structure with the most amino acids is [[ | * The PDB structure with the most amino acids is [[3jb9]] with 39,298 amino acids (alpha carbons only). | ||
* The PDB structure with the largest number ALTLOC is [[1zir]] with 22 alternate location. | * The PDB structure with the largest number ALTLOC is [[1zir]] with 22 alternate location. | ||
* The PDB structures with the heaviest chain are [[4v5x]], [[4v5x]] with 615,436.39 each. | * The PDB structures with the heaviest chain are [[4v5x]], [[4v5x]] with 615,436.39 each. | ||
* The PDB structures with the most ligands are [[ | * The PDB structures with the most ligands are [[3wu2]], [[5b5e]], [[5b66]], [[5h2f]], [[5ws6]] with 21 ligands each. | ||
* The PDB structures with the largest number of distinct chemical elements are [[ | * The PDB structures with the largest number of distinct chemical elements are [[3cpw]], [[3l4p]], [[3ow2]], [[5t5i]], [[5t61]] with 12 elements each. | ||
* The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are | * The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are Zinc (Zn) on 12,457 PDB, Magnesium (Mg) on 11,991 PDB, Calcium (Ca) on 9,251 PDB, Selenium (Se) on 8,241 PDB, Iron (Fe) on 7,494 PDB, Fluorine (F) on 4,334 PDB, Manganese (Mn) on 2,852 PDB, Bromine (Br) on 1,458 PDB, Nickel (Ni) on 1,403 PDB and Copper (Cu) on 1,347 PDB. | ||
* The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), | * The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Californium (Cf [[5kic]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Neon (Ne [[2axt]]), Plutonium (Pu [[4zhd]]), Scandium (Sc [[3zi4]]), Titanium (Ti [[5dyh]]) found in one PDB structure each. | ||
* The PDB structure with the largest file is [[4pth]] with 25,711, | * The PDB structure with the largest file is [[4pth]] with 25,711,447 bytes (compressed). | ||
* The PDB structure with the smallest file is [[3rec]] with 2, | * The PDB structure with the smallest file is [[3rec]] with 2,938 bytes (compressed). | ||
* The PDB structures with the most sources are [[ | * The PDB structures with the most sources are [[2wsc]], [[2wse]] and [[2wsf]] with 6 sources each. | ||
*There are | *There are 1,540 sources that occur in only a single entry. See [[Structures with Exotic Sources]] | ||
'''Determination methods ...''' | '''Determination methods ...''' | ||
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* The PDB structure solved with '''Electron Microscopy''' with the '''best resolution''' is [[8rqb]] with 1.09 Å. | * The PDB structure solved with '''Electron Microscopy''' with the '''best resolution''' is [[8rqb]] with 1.09 Å. | ||
* The PDB structures solved with '''Fiber Diffraction''' with the '''best resolution''' are [[1hgv]], [[1hgz]], [[1hh0]] with 2.4 Å each. | * The PDB structures solved with '''Fiber Diffraction''' with the '''best resolution''' are [[1hgv]], [[1hgz]], [[1hh0]] with 2.4 Å each. | ||
* The PDB structure solved with '''Neutron Diffraction''' with the '''best resolution''' is [[ | * The PDB structure solved with '''Neutron Diffraction''' with the '''best resolution''' is [[8rli]] with 0.91 Å. | ||
* The PDB structure solved with '''Powder Diffraction''' with the '''best resolution''' is [[7qac]] with 2.29 Å. | * The PDB structure solved with '''Powder Diffraction''' with the '''best resolution''' is [[7qac]] with 2.29 Å. | ||
* The PDB structures solved with '''Solution Scattering''' with the '''best resolution''' are [[1ntj]], [[1ntl]], [[1r70]] with 30 Å each. | * The PDB structures solved with '''Solution Scattering''' with the '''best resolution''' are [[1ntj]], [[1ntl]], [[1r70]] with 30 Å each. | ||
* The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | * The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2. | * The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.72 ± 2.91 based on 240 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is | * The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 3.98 ± 3.08 based on 25,082 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | * The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1. | * The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.9 ± 0.37 based on 86 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | * The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | * The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | ||
* The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on | * The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 192,152 structures | ||
* The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | * The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | ||
* The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | * The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | ||
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'''Overall Statistics ...''' | '''Overall Statistics ...''' | ||
* The mean PDB file is | * The mean PDB file is 188.56K ± 327.77K based on 129,444 files. | ||
* There | * There are 4 structure files with 12 citations ([[1dtq]],[[1dtt]],[[1het]],[[3u87]]) and 5 structure files with 10 citations ([[1cc4]],[[1cc6]],[[1cj2]],[[1cj3]],[[1cj4]]). | ||
''Updated by [http://oca.weizmann.ac.il/oca OCA ] on | ''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 5 10:53:57 2025'' | ||
==Notes== | ==Notes== | ||
*[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | *[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | ||