8slb: Difference between revisions
New page: '''Unreleased structure''' The entry 8slb is ON HOLD Authors: Dominik, P.K., Erramilli, S.K., Reddy, B.G., Kossiakoff, A.A. Description: X-ray structure of CorA N-terminal domain in co... |
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The | ==X-ray structure of CorA N-terminal domain in complex with conformation-specific synthetic antibody C12== | ||
<StructureSection load='8slb' size='340' side='right'caption='[[8slb]], [[Resolution|resolution]] 2.04Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[8slb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8SLB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8SLB FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8slb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8slb OCA], [https://pdbe.org/8slb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8slb RCSB], [https://www.ebi.ac.uk/pdbsum/8slb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8slb ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/CORA_THEMA CORA_THEMA] Mediates influx of magnesium ions (By similarity). | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
CorA, the primary magnesium ion channel in prokaryotes and archaea, is a prototypical homopentameric ion channel that undergoes ion-dependent conformational transitions. CorA adopts five-fold symmetric non-conductive states in the presence of high concentrations of Mg(2+), and highly asymmetric flexible states in its complete absence. However, the latter were of insufficient resolution to be thoroughly characterized. In order to gain additional insights into the relationship between asymmetry and channel activation, we exploited phage display selection strategies to generate conformation-specific synthetic antibodies (sABs) against CorA in the absence of Mg(2+). Two sABs from these selections, C12 and C18, showed different degrees of Mg(2+)-sensitivity. Through structural, biochemical, and biophysical characterization, we found the sABs are both conformation-specific but probe different features of the channel under open-like conditions. C18 is highly specific to the Mg(2+)-depleted state of CorA and through negative-stain electron microscopy (ns-EM), we show sAB binding reflects the asymmetric arrangement of CorA protomers in Mg(2+)-depleted conditions. We used X-ray crystallography to determine a structure at 2.0 A resolution of sAB C12 bound to the soluble N-terminal regulatory domain of CorA. The structure shows C12 is a competitive inhibitor of regulatory magnesium binding through its interaction with the divalent cation sensing site. We subsequently exploited this relationship to capture and visualize asymmetric CorA states in different [Mg(2+)] using ns-EM. We additionally utilized these sABs to provide insights into the energy landscape that governs the ion-dependent conformational transitions of CorA. | |||
Conformation-specific Synthetic Antibodies Discriminate Multiple Functional States of the Ion Channel CorA.,Erramilli SK, Dominik PK, Deneka D, Tokarz P, Kim SS, Reddy BG, Skrobek BM, Dalmas O, Perozo E, Kossiakoff AA J Mol Biol. 2023 Sep 1;435(17):168192. doi: 10.1016/j.jmb.2023.168192. Epub 2023 , Jul 1. PMID:37394032<ref>PMID:37394032</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 8slb" style="background-color:#fffaf0;"></div> | ||
[[Category: Dominik | == References == | ||
[[Category: | <references/> | ||
[[Category: | __TOC__ | ||
</StructureSection> | |||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | |||
[[Category: Thermotoga maritima MSB8]] | |||
[[Category: Dominik PK]] | |||
[[Category: Erramilli SK]] | |||
[[Category: Kossiakoff AA]] | |||
[[Category: Reddy BG]] | |||