8itm: Difference between revisions

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'''Unreleased structure'''


The entry 8itm is ON HOLD
==Cryo-EM structure of GIPR splice variant 2 (SV2) in complex with Gs protein==
<StructureSection load='8itm' size='340' side='right'caption='[[8itm]], [[Resolution|resolution]] 3.13&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8itm]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus], [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8ITM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8ITM FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.13&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8itm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8itm OCA], [https://pdbe.org/8itm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8itm RCSB], [https://www.ebi.ac.uk/pdbsum/8itm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8itm ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/GBB1_RAT GBB1_RAT] Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Glucose-dependent insulinotropic polypeptide receptor (GIPR) is a potential drug target for metabolic disorders. It works with glucagon-like peptide-1 receptor and glucagon receptor in humans to maintain glucose homeostasis. Unlike the other two receptors, GIPR has at least 13 reported splice variants (SVs), more than half of which have sequence variations at either C or N terminus. To explore their roles in endogenous peptide-mediated GIPR signaling, we determined the cryoelectron microscopy (cryo-EM) structures of the two N terminus-altered SVs (referred as GIPR-202 and GIPR-209 in the Ensembl database, SV1 and SV2 here, respectively) and investigated the outcome of coexpressing each of them in question with GIPR in HEK293T cells with respect to ligand binding, receptor expression, cAMP (adenosine 3,5-cyclic monophosphate) accumulation, beta-arrestin recruitment, and cell surface localization. It was found that while both N terminus-altered SVs of GIPR neither bound to the hormone nor elicited signal transduction per se, they suppressed ligand binding and cAMP accumulation of GIPR. Meanwhile, SV1 reduced GIPR-mediated beta-arrestin 2 responses. The cryo-EM structures of SV1 and SV2 showed that they reorganized the extracellular halves of transmembrane helices 1, 6, and 7 and extracellular loops 2 and 3 to adopt a ligand-binding pocket-occupied conformation, thereby losing binding ability to the peptide. The results suggest a form of signal bias that is constitutive and ligand-independent, thus expanding our knowledge of biased signaling beyond pharmacological manipulation (i.e., ligand specific) as well as constitutive and ligand-independent (e.g., SV1 of the growth hormone-releasing hormone receptor).


Authors: Zhao, F.H., Hang, K.N., Zhou, Q.T., Shao, L.J., Li, H., Li, W.Z., Lin, S., Dai, A.T., Cai, X.Q., Liu, Y.Y., Xu, Y.N., Feng, W.B., Yang, D.H., Wang, M.W.
Molecular basis of signal transduction mediated by the human GIPR splice variants.,Zhao F, Hang K, Zhou Q, Shao L, Li H, Li W, Lin S, Dai A, Cai X, Liu Y, Xu Y, Feng W, Yang D, Wang MW Proc Natl Acad Sci U S A. 2023 Oct 10;120(41):e2306145120. doi: , 10.1073/pnas.2306145120. Epub 2023 Oct 4. PMID:37792509<ref>PMID:37792509</ref>


Description: Cryo-EM structure of GIPR splice variant 2 (SV2) in complex with Gs protein
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Dai, A.T]]
<div class="pdbe-citations 8itm" style="background-color:#fffaf0;"></div>
[[Category: Li, H]]
 
[[Category: Feng, W.B]]
==See Also==
[[Category: Xu, Y.N]]
*[[Transducin 3D structures|Transducin 3D structures]]
[[Category: Hang, K.N]]
== References ==
[[Category: Liu, Y.Y]]
<references/>
[[Category: Zhao, F.H]]
__TOC__
[[Category: Lin, S]]
</StructureSection>
[[Category: Zhou, Q.T]]
[[Category: Bos taurus]]
[[Category: Wang, M.W]]
[[Category: Homo sapiens]]
[[Category: Yang, D.H]]
[[Category: Large Structures]]
[[Category: Cai, X.Q]]
[[Category: Rattus norvegicus]]
[[Category: Li, W.Z]]
[[Category: Synthetic construct]]
[[Category: Shao, L.J]]
[[Category: Cai XQ]]
[[Category: Dai AT]]
[[Category: Feng WB]]
[[Category: Hang KN]]
[[Category: Li H]]
[[Category: Li WZ]]
[[Category: Lin S]]
[[Category: Liu YY]]
[[Category: Shao LJ]]
[[Category: Wang MW]]
[[Category: Xu YN]]
[[Category: Yang DH]]
[[Category: Zhao FH]]
[[Category: Zhou QT]]

Latest revision as of 15:04, 30 October 2024

Cryo-EM structure of GIPR splice variant 2 (SV2) in complex with Gs proteinCryo-EM structure of GIPR splice variant 2 (SV2) in complex with Gs protein

Structural highlights

8itm is a 5 chain structure with sequence from Bos taurus, Homo sapiens, Rattus norvegicus and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 3.13Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

GBB1_RAT Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Publication Abstract from PubMed

Glucose-dependent insulinotropic polypeptide receptor (GIPR) is a potential drug target for metabolic disorders. It works with glucagon-like peptide-1 receptor and glucagon receptor in humans to maintain glucose homeostasis. Unlike the other two receptors, GIPR has at least 13 reported splice variants (SVs), more than half of which have sequence variations at either C or N terminus. To explore their roles in endogenous peptide-mediated GIPR signaling, we determined the cryoelectron microscopy (cryo-EM) structures of the two N terminus-altered SVs (referred as GIPR-202 and GIPR-209 in the Ensembl database, SV1 and SV2 here, respectively) and investigated the outcome of coexpressing each of them in question with GIPR in HEK293T cells with respect to ligand binding, receptor expression, cAMP (adenosine 3,5-cyclic monophosphate) accumulation, beta-arrestin recruitment, and cell surface localization. It was found that while both N terminus-altered SVs of GIPR neither bound to the hormone nor elicited signal transduction per se, they suppressed ligand binding and cAMP accumulation of GIPR. Meanwhile, SV1 reduced GIPR-mediated beta-arrestin 2 responses. The cryo-EM structures of SV1 and SV2 showed that they reorganized the extracellular halves of transmembrane helices 1, 6, and 7 and extracellular loops 2 and 3 to adopt a ligand-binding pocket-occupied conformation, thereby losing binding ability to the peptide. The results suggest a form of signal bias that is constitutive and ligand-independent, thus expanding our knowledge of biased signaling beyond pharmacological manipulation (i.e., ligand specific) as well as constitutive and ligand-independent (e.g., SV1 of the growth hormone-releasing hormone receptor).

Molecular basis of signal transduction mediated by the human GIPR splice variants.,Zhao F, Hang K, Zhou Q, Shao L, Li H, Li W, Lin S, Dai A, Cai X, Liu Y, Xu Y, Feng W, Yang D, Wang MW Proc Natl Acad Sci U S A. 2023 Oct 10;120(41):e2306145120. doi: , 10.1073/pnas.2306145120. Epub 2023 Oct 4. PMID:37792509[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Zhao F, Hang K, Zhou Q, Shao L, Li H, Li W, Lin S, Dai A, Cai X, Liu Y, Xu Y, Feng W, Yang D, Wang MW. Molecular basis of signal transduction mediated by the human GIPR splice variants. Proc Natl Acad Sci U S A. 2023 Oct 10;120(41):e2306145120. PMID:37792509 doi:10.1073/pnas.2306145120

8itm, resolution 3.13Å

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