8apn: Difference between revisions
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The | ==Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site== | ||
<StructureSection load='8apn' size='340' side='right'caption='[[8apn]], [[Resolution|resolution]] 3.10Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[8apn]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Polytomella_magna Polytomella magna]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8APN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8APN FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.1Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8apn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8apn OCA], [https://pdbe.org/8apn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8apn RCSB], [https://www.ebi.ac.uk/pdbsum/8apn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8apn ProSAT]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Mitoribosomes of green algae display a great structural divergence from their tracheophyte relatives, with fragmentation of both rRNA and proteins as a defining feature. Here, we report a 2.9 A resolution structure of the mitoribosome from the alga Polytomella magna harbouring a reduced rRNA split into 13 fragments. We found that the rRNA contains a non-canonical reduced form of the 5S, as well as a permutation of the LSU domain I. The mt-5S rRNA is stabilised by mL40 that is also found in mitoribosomes lacking the 5S, which suggests an evolutionary pathway. Through comparison to other ribosomes with fragmented rRNAs, we observe that the pattern is shared across large evolutionary distances, and between cellular compartments, indicating an evolutionary convergence and supporting the concept of a primordial fragmented ribosome. On the protein level, eleven peripherally associated HEAT-repeat proteins are involved in the binding of 3' rRNA termini, and the structure features a prominent pseudo-trimer of one of them (mL116). Finally, in the exit tunnel, mL128 constricts the tunnel width of the vestibular area, and mL105, a homolog of a membrane targeting component mediates contacts with an inner membrane bound insertase. Together, the structural analysis provides insight into the evolution of the ribosomal machinery in mitochondria. | |||
Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.,Tobiasson V, Berzina I, Amunts A Nat Commun. 2022 Oct 17;13(1):6132. doi: 10.1038/s41467-022-33582-5. PMID:36253367<ref>PMID:36253367</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: Amunts | <div class="pdbe-citations 8apn" style="background-color:#fffaf0;"></div> | ||
[[Category: | |||
[[Category: | ==See Also== | ||
*[[Ribosome 3D structures|Ribosome 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Polytomella magna]] | |||
[[Category: Amunts A]] | |||
[[Category: Berzina I]] | |||
[[Category: Tobiasson V]] | |||
Latest revision as of 12:27, 17 October 2024
Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P siteStructure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site
Structural highlights
Publication Abstract from PubMedMitoribosomes of green algae display a great structural divergence from their tracheophyte relatives, with fragmentation of both rRNA and proteins as a defining feature. Here, we report a 2.9 A resolution structure of the mitoribosome from the alga Polytomella magna harbouring a reduced rRNA split into 13 fragments. We found that the rRNA contains a non-canonical reduced form of the 5S, as well as a permutation of the LSU domain I. The mt-5S rRNA is stabilised by mL40 that is also found in mitoribosomes lacking the 5S, which suggests an evolutionary pathway. Through comparison to other ribosomes with fragmented rRNAs, we observe that the pattern is shared across large evolutionary distances, and between cellular compartments, indicating an evolutionary convergence and supporting the concept of a primordial fragmented ribosome. On the protein level, eleven peripherally associated HEAT-repeat proteins are involved in the binding of 3' rRNA termini, and the structure features a prominent pseudo-trimer of one of them (mL116). Finally, in the exit tunnel, mL128 constricts the tunnel width of the vestibular area, and mL105, a homolog of a membrane targeting component mediates contacts with an inner membrane bound insertase. Together, the structural analysis provides insight into the evolution of the ribosomal machinery in mitochondria. Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.,Tobiasson V, Berzina I, Amunts A Nat Commun. 2022 Oct 17;13(1):6132. doi: 10.1038/s41467-022-33582-5. PMID:36253367[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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