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==== | ==Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/closed state (composite structure)== | ||
<StructureSection load='7u05' size='340' side='right'caption='[[7u05]]' scene=''> | <StructureSection load='7u05' size='340' side='right'caption='[[7u05]], [[Resolution|resolution]] 3.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | <table><tr><td colspan='2'>[[7u05]] is a 22 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7U05 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7U05 FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7u05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7u05 OCA], [https://pdbe.org/7u05 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7u05 RCSB], [https://www.ebi.ac.uk/pdbsum/7u05 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7u05 ProSAT]</span></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.7Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7u05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7u05 OCA], [https://pdbe.org/7u05 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7u05 RCSB], [https://www.ebi.ac.uk/pdbsum/7u05 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7u05 ProSAT]</span></td></tr> | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Rab1 and Rab11 are essential regulators of the eukaryotic secretory and endocytic recycling pathways. The transport protein particle (TRAPP) complexes activate these guanosine triphosphatases via nucleotide exchange using a shared set of core subunits. The basal specificity of the TRAPP core is toward Rab1, yet the TRAPPII complex is specific for Rab11. A steric gating mechanism has been proposed to explain TRAPPII counterselection against Rab1. Here, we present cryo-electron microscopy structures of the 22-subunit TRAPPII complex from budding yeast, including a TRAPPII-Rab11 nucleotide exchange intermediate. The Trs130 subunit provides a "leg" that positions the active site distal to the membrane surface, and this leg is required for steric gating. The related TRAPPIII complex is unable to activate Rab11 because of a repulsive interaction, which TRAPPII surmounts using the Trs120 subunit as a "lid" to enclose the active site. TRAPPII also adopts an open conformation enabling Rab11 to access and exit from the active site chamber. | |||
Structure of a TRAPPII-Rab11 activation intermediate reveals GTPase substrate selection mechanisms.,Bagde SR, Fromme JC Sci Adv. 2022 May 13;8(19):eabn7446. doi: 10.1126/sciadv.abn7446. Epub 2022 May , 13. PMID:35559680<ref>PMID:35559680</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 7u05" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Saccharomyces cerevisiae]] | ||
[[Category: Bagde SR]] | |||
[[Category: Fromme JC]] | |||
Latest revision as of 12:13, 17 October 2024
Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/closed state (composite structure)Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/closed state (composite structure)
Structural highlights
Publication Abstract from PubMedRab1 and Rab11 are essential regulators of the eukaryotic secretory and endocytic recycling pathways. The transport protein particle (TRAPP) complexes activate these guanosine triphosphatases via nucleotide exchange using a shared set of core subunits. The basal specificity of the TRAPP core is toward Rab1, yet the TRAPPII complex is specific for Rab11. A steric gating mechanism has been proposed to explain TRAPPII counterselection against Rab1. Here, we present cryo-electron microscopy structures of the 22-subunit TRAPPII complex from budding yeast, including a TRAPPII-Rab11 nucleotide exchange intermediate. The Trs130 subunit provides a "leg" that positions the active site distal to the membrane surface, and this leg is required for steric gating. The related TRAPPIII complex is unable to activate Rab11 because of a repulsive interaction, which TRAPPII surmounts using the Trs120 subunit as a "lid" to enclose the active site. TRAPPII also adopts an open conformation enabling Rab11 to access and exit from the active site chamber. Structure of a TRAPPII-Rab11 activation intermediate reveals GTPase substrate selection mechanisms.,Bagde SR, Fromme JC Sci Adv. 2022 May 13;8(19):eabn7446. doi: 10.1126/sciadv.abn7446. Epub 2022 May , 13. PMID:35559680[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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