FirstGlance/Index: Difference between revisions
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*[[FirstGlance in Jmol]] - Overview of the software package and its integration into Proteopedia. | *[[FirstGlance in Jmol]] - Overview of the software package and its integration into Proteopedia. | ||
*[[FirstGlance/Virus Capsids and Other Large Assemblies]] New capabilities in August, 2022. | |||
*[[How to predict structures with AlphaFold|AlphaFold: How to predict structures]] has a section on the advantages of visualization of predicted structures in FirstGlance. | |||
*[[Biological Unit]] tells how to visualize the biological unit in FirstGlance. | |||
*[[Cation-pi interactions]] mentions that FirstGlance has a tool to display these easily. | |||
*[[ConSurf Quick Analysis Procedure]] mentions using FirstGlance to visualize ConSurf results. | |||
*[[Disulfide bond]] mentions FirstGlance's tool that highlights these and quantitates all sulfurs and seleniums. | |||
*[[Electron density maps]] [[Image:New yellow1.gif]] mentions how easy it is to see them in FirstGlance, and provides animated illustrations from FirstGlance. | |||
*[[Electrostatic potential maps]] [[Image:New yellow1.gif]] | |||
*[[FirstGlance/Evaluating Protein Crosslinks]] [[Image:New yellow1.gif]] | |||
*[[FirstGlance/How To Measure A Virus Capsid]] [[Image:New yellow1.gif]] | |||
*[[FirstGlance/Visualizing Conservation]]: [[Image:New yellow1.gif]] Easy ways to see [[ConSurf/Index|ConSurf]] colors for residues of interest. | |||
*[[Free R]] tells how FirstGlance helps to interpret free R. | |||
*[[Help:Copying FirstGlance Scenes into Proteopedia]] | *[[Help:Copying FirstGlance Scenes into Proteopedia]] | ||
*[[Hydrogen bonds]] describes the ''Contacts & Non-Covalent Interactions'' tool in FirstGlance. | |||
*[[How to see conserved regions]] includes a section on FirstGlance. | |||
*[[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] discusses advantages of using FirstGlance. | |||
*[[Practical Guide to Homology Modeling]] a section on visualizing predicted structures in FirstGlance. | |||
*[[Protein crosslinks]]: FirstGlance automatically detects and alerts you to six unusual types. | |||
*[[Salt bridges]] mentions that FirstGlance has a tool to display these easily. | |||
*[[User:Eric Martz/Introduction to Structural Bioinformatics|Introduction to Structural Bioinformatics]]: Syllabi and assessment tools based heavily on use of FirstGlance by students. | |||
*[[Temperature value]] mentions the use of FirstGlance to color by temperature, and to list missing residues and incomplete sidechains. | |||
==External Resources== | ==External Resources== | ||
*[http://firstglance.jmol.org FirstGlance.Jmol.Org]: the software package itself. | *[http://firstglance.jmol.org FirstGlance.Jmol.Org]: the software package itself. | ||
*[http://firstglance.jmol.org/whatis.htm What Is FirstGlance in Jmol]: an overview of capabilities. | |||
*[http://tinyurl.com/firstglance1 tinyurl.com/firstglance1]: YouTube illustrated talk introducing FirstGlance and its design goals. | |||
*[http://tinyurl.com/movingmolecules tinyurl.com/movingmolecules]: Examples (in Google Slides) of animations easily created in FirstGlance. | |||
*[http://firstglance.jmol.org/where.htm Index to FirstGlance]: Where to find specific tools within FirstGlance, and how to do specific tasks using FirstGlance. | |||
==See Also== | |||
*[[Jmol/Index]] | |||
*[[ConSurf/Index]] | |||
*[[Index pages]] | |||