6zqw: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 6zqw is ON HOLD
+==Cryo-EM structure of immature Spondweni virus==
+<SX load='6zqw' size='340' side='right' viewer='molstar' caption='[[6zqw]], [[Resolution|resolution]] 7.80&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6zqw]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Spondweni_virus Spondweni virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZQW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZQW FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 7.8&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zqw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zqw OCA], [https://pdbe.org/6zqw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zqw RCSB], [https://www.ebi.ac.uk/pdbsum/6zqw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zqw ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/C8XPB6_9FLAV C8XPB6_9FLAV] Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[ARBA:ARBA00003504]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Flaviviruses such as Dengue (DENV) or Zika virus (ZIKV) assemble into an immature form within the endoplasmatic reticulum (ER), and are then processed by furin protease in the trans-Golgi. To better grasp maturation, we carry out cryo-EM reconstructions of immature Spondweni virus (SPOV), a human flavivirus of the same serogroup as ZIKV. By employing asymmetric localised reconstruction we push the resolution to 3.8 A, enabling us to refine an atomic model which includes the crucial furin protease recognition site and a conserved Histidine pH-sensor. For direct comparison, we also solve structures of the mature forms of SPONV and DENV to 2.6 A and 3.1 A, respectively. We identify an ordered lipid that is present in only the mature forms of ZIKV, SPOV, and DENV and can bind as a consequence of rearranging amphipathic stem-helices of E during maturation. We propose a structural role for the pocket and suggest it stabilizes mature E.
-Authors:
+Flavivirus maturation leads to the formation of an occupied lipid pocket in the surface glycoproteins.,Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM Nat Commun. 2021 Feb 23;12(1):1238. doi: 10.1038/s41467-021-21505-9. PMID:33623019<ref>PMID:33623019</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
+<div class="pdbe-citations 6zqw" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</SX>
+[[Category: Large Structures]]
+[[Category: Spondweni virus]]
+[[Category: Carrique L]]
+[[Category: Dejnirattisai W]]
+[[Category: Grimes JM]]
+[[Category: Ho SF]]
+[[Category: Ilca SL]]
+[[Category: Karia D]]
+[[Category: Keown JR]]
+[[Category: Kotecha A]]
+[[Category: Mongkolsapaya J]]
+[[Category: Renner M]]
+[[Category: Screaton GR]]
+[[Category: Serna Martin I]]