6ziy: Difference between revisions

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-'''Unreleased structure'''
-The entry 6ziy is ON HOLD  until Paper Publication
+==Respiratory complex I from Thermus thermophilus, NADH dataset, major state==
+<StructureSection load='6ziy' size='340' side='right'caption='[[6ziy]], [[Resolution|resolution]] 4.25&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6ziy]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZIY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZIY FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.25&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ziy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ziy OCA], [https://pdbe.org/6ziy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ziy RCSB], [https://www.ebi.ac.uk/pdbsum/6ziy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ziy ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NQO1_THET8 NQO1_THET8] NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient required for the synthesis of ATP. The nqo1 subunit contains the NADH-binding site and the primary electron acceptor FMN.
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Complex I is the first and the largest enzyme of respiratory chains in bacteria and mitochondria. The mechanism which couples spatially separated transfer of electrons to proton translocation in complex I is not known. Here we report five crystal structures of T. thermophilus enzyme in complex with NADH or quinone-like compounds. We also determined cryo-EM structures of major and minor native states of the complex, differing in the position of the peripheral arm. Crystal structures show that binding of quinone-like compounds (but not of NADH) leads to a related global conformational change, accompanied by local re-arrangements propagating from the quinone site to the nearest proton channel. Normal mode and molecular dynamics analyses indicate that these are likely to represent the first steps in the proton translocation mechanism. Our results suggest that quinone binding and chemistry play a key role in the coupling mechanism of complex I.
-Authors:
+Key role of quinone in the mechanism of respiratory complex I.,Gutierrez-Fernandez J, Kaszuba K, Minhas GS, Baradaran R, Tambalo M, Gallagher DT, Sazanov LA Nat Commun. 2020 Aug 18;11(1):4135. doi: 10.1038/s41467-020-17957-0. PMID:32811817<ref>PMID:32811817</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
+<div class="pdbe-citations 6ziy" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[NADH-quinone oxidoreductase|NADH-quinone oxidoreductase]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Thermus thermophilus]]
+[[Category: Gallagher GT]]
+[[Category: Kaszuba K]]
+[[Category: Sazanov LA]]
+[[Category: Tambalo M]]