7c3t: Difference between revisions

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<StructureSection load='7c3t' size='340' side='right'caption='[[7c3t]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
<StructureSection load='7c3t' size='340' side='right'caption='[[7c3t]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[7c3t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea_ATCC_19718 Nitrosomonas europaea ATCC 19718]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7C3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7C3T FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7C3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7C3T FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZG:5-AMINO-1H-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-7-OL'>AZG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZG:5-AMINO-1H-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-7-OL'>AZG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7c3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7c3t OCA], [https://pdbe.org/7c3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7c3t RCSB], [https://www.ebi.ac.uk/pdbsum/7c3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7c3t ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7c3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7c3t OCA], [https://pdbe.org/7c3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7c3t RCSB], [https://www.ebi.ac.uk/pdbsum/7c3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7c3t ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q82Y41_NITEU Q82Y41_NITEU]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Guanine deaminases (GDs) are essential enzymes that regulate the overall nucleobase pool. Since the deamination of guanine to xanthine results in the production of a mutagenic base, these enzymes have evolved to be very specific in nature. Surprisingly, they accept structurally distinct triazine ammeline, an intermediate in the melamine pathway, as one of the moonlighting substrates. Here, by employing NE0047 (a GD from Nitrosomonas europaea), we delineate the nuance in the catalytic mechanism that allows these two distinct substrates to be catalyzed. A combination of enzyme kinetics, X-ray crystallographic, and calorimetric studies reveal that GDs operate via a dual proton shuttle mechanism with two glutamates, E79 and E143, crucial for deamination. Additionally, N66 appears to be central for substrate anchoring and participates in catalysis. The study highlights the importance of closure of the catalytic loop and of maintenance of the hydrophobic core by capping residues like F141 and F48 for the creation of an apt environment for activation of the zinc-assisted catalysis. This study also analyzes evolutionarily distinct GDs and asserts that GDs incorporate subtle variations in the active site architectures while keeping the most critical active site determinants conserved.
Structure Guided Mutagenesis Reveals the Substrate Determinants of Guanine Deaminase.,Singh J, Gaded V, Bitra A, Anand R J Struct Biol. 2021 May 16:107747. doi: 10.1016/j.jsb.2021.107747. PMID:34010666<ref>PMID:34010666</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 7c3t" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Deaminase 3D structures|Deaminase 3D structures]]
*[[Deaminase 3D structures|Deaminase 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Nitrosomonas europaea ATCC 19718]]
[[Category: Anand R]]
[[Category: Anand R]]
[[Category: Bitra A]]
[[Category: Bitra A]]
[[Category: Gaded V]]
[[Category: Gaded V]]
[[Category: Singh J]]
[[Category: Singh J]]

Latest revision as of 13:54, 23 October 2024

Crystal structure of NE0047 (N66Q) mutant in complex with 8-azaguanineCrystal structure of NE0047 (N66Q) mutant in complex with 8-azaguanine

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.07Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

See Also

7c3t, resolution 2.07Å

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