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Ribonucleotide reductase 3D structures: Difference between revisions

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*'''Class Ia ribonucleotide reductase'''
*'''Class Ia ribonucleotide reductase'''


*Ribonucleotide reductase large subunit
*Ribonucleotide reductase large subunit R1


**[[1zyz]], [[1zzd]], [[2cvs]], [[2cvt]], [[2cvu]], [[2cvv]], [[2cvw]], [[2cvx]], [[2cvy]] - yRNR R1 – yeast<BR />
**[[1zyz]], [[1zzd]], [[2cvs]], [[2cvt]], [[2cvu]], [[2cvv]], [[2cvw]], [[2cvx]], [[2cvy]] - yRNR R1 – yeast<BR />
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**[[2wgh]], [[5d1y]] - hRNR M1 + ATP + Mg<BR />
**[[2wgh]], [[5d1y]] - hRNR M1 + ATP + Mg<BR />
**[[6aui]] - hRNR M1 + ATP + CDP<br />
**[[6aui]] - hRNR M1 + ATP + CDP<br />
**[[5tus]], [[4x3v]] - hRNR M1 + inhibitor + TTP<br />
**[[5tus]], [[4x3v]], [[6l3r]], [[6l7l]], [[6lkm]] - hRNR M1 + inhibitor + TTP<br />
**[[3paw]] - yRNR R1 + ATP<BR />   
**[[3paw]] - yRNR R1 + ATP<BR />   
**[[3k8t]] - yRNR R1 + ADP analog<BR />
**[[3k8t]] - yRNR R1 + ADP analog<BR />
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**[[3rsr]] – yRNR R1 + inhibitor<br />
**[[3rsr]] – yRNR R1 + inhibitor<br />
**[[1qfn]] - EcRNR R1 + glutaredoxin 1<br />
**[[1qfn]] - EcRNR R1 + glutaredoxin 1<br />
**[[7agj]] - AaRNR R1 + ATP – ''Aquifex aeolicus''<br />


*RNR small subunit
*RNR small subunit R2


**[[3hf1]], [[2vux]], [[2uw2]], [[4djn]], [[3olj]] – hRNR M2<BR />
**[[3hf1]], [[2vux]], [[2uw2]], [[4djn]], [[3olj]] – hRNR M2<BR />
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**[[2xof]], [[1av8]], [[1rib]] – EcRNR R2 + Fe2O<BR />
**[[2xof]], [[1av8]], [[1rib]] – EcRNR R2 + Fe2O<BR />
**[[2alx]], [[1jqc]], [[1jpr]] - EcRNR R2 + Mn<br />
**[[2alx]], [[1jqc]], [[1jpr]] - EcRNR R2 + Mn<br />
**[[1piy]], [[1r65]], [[1mxr]], [[1xik]] - EcRNR R2 + Fe<br />
**[[1piy]], [[1r65]], [[1mxr]], [[1xik]], [[7ai8]], [[7ai9]], [[7bet]] - EcRNR R2 + Fe<br />
**[[1piz]], [[1pj0]], [[1pj1]], [[1pim]], [[1piu]], [[1biq]], [[1pfr]] - EcRNR R2 (mutant) + Fe<BR />
**[[1piz]], [[1pj0]], [[1pj1]], [[1pim]], [[1piu]], [[1biq]], [[1pfr]] - EcRNR R2 (mutant) + Fe<BR />
**[[1yfd]], [[2av8]] - EcRNR R2 (mutant) + Fe2O<br />
**[[1yfd]], [[2av8]] - EcRNR R2 (mutant) + Fe2O<br />
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**[[5omj]], [[5omk]] - GkRNR + Fe <br />
**[[5omj]], [[5omk]] - GkRNR + Fe <br />
**[[4hr0]], [[4hr4]] - GkRNR + Fe + Mn <br />
**[[4hr0]], [[4hr4]] - GkRNR + Fe + Mn <br />
**[[6f6c]], [[6f6e]], [[6f6f]], [[6f6g]], [[6f6h]], [[6f6k]] - GkRNR (mutant) + Fe + Mn <br />
**[[6f6c]], [[6f6e]], [[6f6f]], [[6f6g]], [[6f6h]], [[6f6k]], [[6qjv]], [[6qk0]], [[6qk1]], [[6qk2]] - GkRNR (mutant) + Fe + Mn <br />
**[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br />
**[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br />
**[[6gp2]], [[6gp3]] - RNR R2 – ''Mesoplasma florum''<br />
**[[7aik]], [[7ail]], [[7q39]], [[7q3c]] - AaRNR R2 <br />
**[[6y2n]] - RNR R2 – ''Saccharopolyspora erythraea''<br />
**[[6ebz]], [[6ebz]] - AuRNR R2 – ''Aerococcus urinae''<br />
**[[6qrz]] - RNR R2 – ''Sulfolobus acidocaldarius''<br />
**[[6zjk]] - RNR R2 – ''Clostridium botulinum''<br />


*''Ribonucleotide reductase small subunit complex''
*''Ribonucleotide reductase small subunit complex''
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*Ribonucleotide reductase small+large subunit
*Ribonucleotide reductase small+large subunit


**[[1r1r]], [[5r1r]], [[6r1r]], [[7r1r]], [[1r1r]] – EcRNR R1 (mutant) + R2<br />
**[[3uus]] - EcRNR R1+ R2 + Fe + ATP<br />
**[[3uus]] - EcRNR R1+ R2 + Fe + ATP<br />
**[[4erm]] - EcRNR R1+ R2 + Fe2O + ATP + ADP<br />
**[[4erm]] - EcRNR R1+ R2 + Fe2O + ATP + ADP<br />
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**[[2r1r]] - EcRNR R1 + R2 + TTP<BR />
**[[2r1r]] - EcRNR R1 + R2 + TTP<BR />
**[[3r1r]] - EcRNR R1 + R2 + AMPPNP<BR />
**[[3r1r]] - EcRNR R1 + R2 + AMPPNP<BR />
**[[6w4x]] - EcRNR R1 + R2 + GDP + TTP – Cryo EM<br />
**[[4r1r]] - EcRNR R1 + R2 + GDP + TTP<BR />
**[[4r1r]] - EcRNR R1 + R2 + GDP + TTP<BR />
**[[2bq1]] - StRNR R1+ R2<br />
**[[2bq1]] - StRNR R1+ R2<br />
**[[5im3]] - RNR + dATP – ''Pseudomonas aeruginosa''<br />
**[[5im3]] - RNR + dATP – ''Pseudomonas aeruginosa''<br />
**[[7mdi]] - RNR R1 + R2 + CDP + DTP – ''Neisseria gonorrhoea'' - Cryo EM<br />


*'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit
*'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit; NrdI – FMN containing flavoprotein


**[[6cgm]] - BaRNR NrdE  – ''Bacillus subtilis''<br />
**[[6cgm]] - BaRNR NrdE  – ''Bacillus subtilis''<br />
**[[6qo5]], [[6qo7]], [[6qo8]], [[6qo9]], [[6qob]], [[6tqv]], [[6tqw]], [[6tqx]] - BaRNR NrdF <br />
**[[6tqy]], [[6tqz]] - BaRNR NrdF (mutant)<br />
**[[4dr0]] - BaRNR NrdF + Mn <br />
**[[4dr0]] - BaRNR NrdF + Mn <br />
**[[6myx]] - BaRNR NrdE + DTP – Cryo EM<br />
**[[6myx]] - BaRNR NrdE + DTP – Cryo EM<br />
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**[[4bmu]] - BcRNR NrdF + Mn<br />
**[[4bmu]] - BcRNR NrdF + Mn<br />
**[[4bmo]], [[4bmp]] - BcRNR NrdF + NrdI + Fe + FMN<br />
**[[4bmo]], [[4bmp]] - BcRNR NrdF + NrdI + Fe + FMN<br />
**[[7z3d]], [[7z3e]] - BcRNR NrdF + NrdI + Mn + FMN<br />
**[[4m1f]] - EcRNR NrdF<br />
**[[4m1f]] - EcRNR NrdF<br />
**[[3n37]] - EcRNR NrdF + Mn<br />
**[[3n37]] - EcRNR NrdF + Mn<br />
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**[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br />
**[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br />
**[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br />
**[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br />
*Class Id RNR or ribonucleotide-diphosphate reductase; NrdB – small subunit
**[[6sf4]], [[6sf5]] - RNR β subunit  – ''Leeuwenhoekiella blandensis''<br />
**[[6cwo]], [[6cwq]] - FjRNR b subunit 1-324 + Mn – ''Flavobacterium johnsoniae''<br />
**[[8dq4]], [[8dq5]] - FjRNR b subunit (mutant) + Mn <br />
**[[6dqw]] - FjRNR a subunit 1-565<br />
**[[6dqx]] - RNR a subunit  – ''Actinobacillus ureae''<br />
**[[8dq3]] - RNR b subunit  + Mn – ''Aggregatibacter actinomycetemcomitans''<br />
*Class Ie RNR
**[[6ebo]] - AuRNR beta subunit - ''Aerococcus urinae'' <br />
**[[7mms]], [[7mmt]], [[7mmu]], [[7mmv]], [[7mmw]] - AuRNR beta subunit + Cu<br />
**[[6ebp]] - AuRNR beta subunit + L-Dopa<br />
**[[6ebz]] - AuRNR beta subunit + L-Dopa + SCN<br />
**[[6ebq]] - AuRNR NrdI + FMN<br />
**[[7mmp]], [[7mmq]] - AuRNR + NrdI + FMN<br />
**[[7mmr]] - AuRNR + NrdI + FMN + Cu<br />
**[[6dqx]] - RNR α subunit  – ''Actinobacillus ureae''<br />


*'''Class II ribonucleotide reductase'''
*'''Class II ribonucleotide reductase'''
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**[[1h7b]] – T4RNR (mutant)  <br />
**[[1h7b]] – T4RNR (mutant)  <br />
**[[4u3e]] – TmRNR large subunit  <br />
**[[4u3e]] – TmRNR large subunit  <br />
*Vitamin B12-dependent RNR
**[[7b9p]], [[7b9q]] – RNR + DTP – ''Rhodobacter sphaeroides''  <br />
*Anaerobic ribonucleotide-triphosphate reductase
**[[8p23]], [[8p27]], [[8p28]], [[8p2c]], [[8p2d]], [[8p2s]], [[8p39]] – ARNR + DTP – ''Segatella copri''  - Cryo EM<br />
*RNR
**[[7urg]] – RNR + TTP – ''Synechococcus'' phage – Cryo EM  <br />
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel
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