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Chaperonin 3D structures: Difference between revisions

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New page: == 3D Structures of Chaperonin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *'''Group I''' *''Large subunit'...
 
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|


*'''Group I'''
*'''Group I'''


*''Large subunit''
*''Large subunit'' or Hsp60 [[Heat shock protein]]


**[[7v94]] – GroEL (mutant) – grouper
**[[3m6c]] – MtGroEL1 apical domain – ''Mycobacterium tuberculosis''<BR />
**[[3m6c]] – MtGroEL1 apical domain – ''Mycobacterium tuberculosis''<BR />
**[[1sjp]], [[3rtk]] – MtGroEL2 residues 42-539<BR />
**[[1sjp]], [[3rtk]] – MtGroEL2 residues 42-539<BR />
**[[2eu1]], [[4v43]], [[1oel]], [[1grl]], [[2yey]], [[4wsc]], [[4wgl]], [[5opw]] – EcGroEL (mutant) - ''Escherichia coli''<BR />
**[[4v43]], [[2yey]], [[4wsc]], [[4wgl]], [[5opw]] – EcGroEL (mutant) - ''Escherichia coli''<BR />
**[[3e76]], [[2nwc]], [[1xck]], [[1ss8]], [[4hel]] – EcGroEL<BR />
**[[1oel]], [[1xck]], [[1ss8]], [[2nwc]], [[4hel]] – EcGroEL<BR />
**[[3c9v]], [[3cau]], [[2ynj]], [[5w0s]] – EcGroEL – Cryo EM<BR />
**[[1gr5]], [[2ynj]], [[3c9v]], [[3cau]], [[5w0s]], [[7xoj]], [[7xok]], [[7xol]], [[7xom]], [[7xon]], [[7xoo]], [[7xop]], [[7xoq]], [[7xor]], [[7xos]], [[9c0c]] – EcGroEL – Cryo EM<BR />
**[[2c7e]], [[1gr5]], [[4aaq]] - EcGroEL (mutant) – Cryo EM<BR />
**[[2c7e]], [[4aaq]] - EcGroEL (mutant) – Cryo EM<BR />
**[[1dk7]], [[1la1]] - EcGroEL apical domain<br />
**[[1fy9]], [[1fya]], [[1kid]], [[3vz6]], [[3vz7]], [[3vz8]] – EcGroEL apical domain (mutant) <BR />
**[[1fy9]], [[1fya]], [[1kid]], [[1jon]], [[3vz6]], [[3vz7]], [[3vz8]] – EcGroEL apical domain (mutant) <BR />
**[[3osx]] - Cpn60 apical domain – ''Xenorhabdus nematophila''<br />
**[[1srv]] – TtCPN60 apical domain - ''Thermus thermophilus''<BR />
**[[1iok]] – Cpn60 – ''Paracoccus denitrificans''<br />
**[[3osx]] - CPN60 apical domain – ''Xenorhabdus nematophila''<br />
**[[1iok]] – CPN60 – ''Paracoccus denitrificans''<br />
**[[5da8]] - GroEL – ''Chlorobium tepidum''<br />
**[[5da8]] - GroEL – ''Chlorobium tepidum''<br />
**[[5cdk]], [[5cdj]], [[5cdi]] - GroEL apical domain – ''Chlamydomonas reinhardtii''<br />
**[[5cdk]], [[5cdj]], [[5cdi]] - GroEL apical domain – ''Chlamydomonas reinhardtii''<br />
**[[6kfv]] - GroEL – ''Xanthomonas oryzae''<br />
**[[8wu4]] - HtGroEL – ''Hydrogenophilus thermoluteolus'' – Cryo EM<br />
**[[9c0d]] - GroEL – ''Enterococcus faecium'' – Cryo EM<br />
*'''Human mitochondrial chaperonin or Hsp60, Hsp10 see [[Heat Shock Proteins]]'''


*''Large subunit binary complex''
*''Large subunit binary complex''


**[[1kp8]] - EcGroEL (mutant) + ATP<BR />
**[[1sx3]] - EcGroEL + ATP
**[[4aar]], [[4aas]], [[4aau]], [[4ab2]], [[4ab3]] - EcGroEL (mutant) + ATP – Cryo EM<br />
**[[1kp8]] - EcGroEL (mutant) + ATP
**[[1sx3]] - EcGroEL + ATP<BR />
**[[8bl2]], [[8bl7]], [[8blc]], [[8bld]], [[8ble]], [[8blf]], [[8bly]] - EcGroEL + ATP – Cryo EM
**[[1sx4]] - EcGroEL + ADP<BR />
**[[4aar]], [[4aas]], [[4aau]], [[4ab2]], [[4ab3]], [[8g7l]] - EcGroEL (mutant) + ATP – Cryo EM
**[[8p4p]] - EcGroEL + ATP + ADP – Cryo EM
**[[8ba7]], [[8ba8]], [[8ba9]] - EcGroEL + ADP + RuBisco – Cryo EM
**[[9c0b]] - EcGroEL + inhibitor – Cryo EM
**[[1mnf]] – EcGroEL + peptide
**[[8s32]] - EcGroEL + peptide – Cryo EM
**[[7ywy]] - EcGroEL + chaperedoxin – Cryo EM
**[[1sx4]] - EcGroEL + ADP
**[[4ki8]] - EcGroEL (mutant) + ADP<br />
**[[4ki8]] - EcGroEL (mutant) + ADP<br />
**[[1mnf]] – EcGroEL + polypeptide<BR />
**[[7k3z]] – Cpn60 (mutant) + ATP – ''Plasmodium falciparum''<br />
**[[2cgt]] – EcGroEL + capsid assbly protein GP31 – EM<BR />
**[[1dkd]] - EcGroEL apical domain + polypeptide<br />
**[[4pj1]] - GroEL + ADP – human<br />


*''Small subunit''
*''Small subunit''


**[[3nx6]] – GroES residues 40-134 (mutant) – ''Xanthomonas oryzae''<BR />
**[[3nx6]] – GroES residues 40-134 (mutant) – ''Xanthomonas oryzae''<BR />
**[[1wnr]] – TtCPN10 residues 1-94<BR />
**[[1wnr]] – TtCpn10 residues 1-94<BR />
**[[1p3h]], [[1hx5]] – MtCPN10<BR />
**[[1p3h]], [[1hx5]] – MtCpn10<BR />
**[[1p82]], [[1p83]] - MtCPN10 residues 1-25 - NMR<BR />
**[[1p82]], [[1p83]] - MtCpn10 residues 1-25 - NMR<BR />
**[[1egs]] - GroES residues 19-27 - NMR
**[[1egs]] - GroES residues 19-27 - NMR


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**[[1svt]], [[1pcq]] - EcGroEL + GroES<BR />
**[[1svt]], [[1pcq]] - EcGroEL + GroES<BR />
**[[1pf9]], [[1aon]], [[4pko]], [[5opx]] - EcGroEL + GroES + ADP<BR />
**[[1pf9]], [[1aon]], [[4pko]], [[5opx]] - EcGroEL + GroES + ADP<BR />
**[[2c7d]] - EcGroEL + GroES + ADP – Cryo EM
**[[3zpz]], [[3zq0]], [[3zq1]], [[7pbj]], [[7pbx]], [[8p4m]], [[8p4n]], [[8qxs]], [[8qxt]] - EcGroEL + GroES + ADP – Cryo EM<br />
**[[8bkz]], [[8bm0]], [[8bm1]], [[8bmd]], [[8bmo]], [[8bmt]], [[8p4r]] - EcGroEL + GroES + ATP – Cryo EM<br />
**[[3wvl]] - EcGroEL (mutant) + GroES + ATP<br />
**[[3wvl]] - EcGroEL (mutant) + GroES + ATP<br />
**[[2c7c]], [[2c7d]] - EcGroEL + GroES – Cryo EM<BR />
**[[8g7n]] - EcGroEL (mutant) + GroES + ATP – Cryo EM<br />
**[[1gru]] - EcGroEL + GroES + ATP + ADP – Cryo EM<BR />
**[[8qxu]], [[8qxv]] - EcGroEL + GroES + ATP + ADP – Cryo E tomography<br />
**[[3zpz]], [[3zq0]], [[3zq1]] - EcGroEL + GroES + ADP – Cryo EM<br />
**[[3zpz]], [[3zq0]], [[3zq1]], [[7pbj]], [[7pbx]] - EcGroEL + GroES + ADP – Cryo EM<br />
**[[4v4o]], [[4pkn]] - TtCPN60 + CPN10 + ADP
**[[7vwx]] - EcGroEL + GroES + RuBisCO – Cryo EM<br />
**[[8p4o]] - EcGroEL + GroES + SAM synthase + ADP – Cryo EM<br />
**[[4pkn]] - TtCpn60 + Cpn10 + ADP
**[[8wuc]], [[8wuw]], [[8wux]] - HtGroEL + GroES + ADP – Cryo EM<br />


*'''Group II'''
*'''Group II'''


**[[3izh]], [[3izi]], [[3izj]], [[3izk]], [[3izl]], [[3izm]], [[3izn]], [[3los]], [[3iyf]], [[3j3x]] – MmCPN – ''Methanococcus maripaludis'' – EM<BR />
**[[3izh]], [[3izi]], [[3izj]], [[3izk]], [[3izl]], [[3izm]], [[3izn]], [[3los]], [[3iyf]], [[3j3x]], [[7r9e]], [[7r9h]], [[7r9i]], [[7r9j]], [[7r9k]], [[7r9m]], [[7r9o]], [[7r9u]] – MmCpn – ''Methanococcus maripaludis'' – Cryo EM<BR />
**[[3kfb]], [[3kfe]], [[3kfk]] – MmCPN<BR />
**[[3kfb]], [[3kfe]], [[3kfk]] – MmCpn<BR />
**[[5w79]] - MmCPN (mutant)<br />
**[[5w79]] - MmCpn (mutant)<br />
**[[3j02]], [[3j03]] – MmCPN (mutant) – Cryo EM<br />
**[[3j02]], [[3j03]] – MmCpn (mutant) – Cryo EM<br />
**[[3ruq]] - MmCPN + ADP<br />
**[[3ruq]] - MmCpn + ADP<br />
**[[3rus]], [[5w74]] - MmCPN (mutant) + ADP<br />
**[[3rus]], [[5w74]] - MmCpn (mutant) + ADP<br />
**[[3ruw]] - MmCPN (mutant) + ADP-AlF3<br />
**[[7rak]] – MmCpn + ATP – Cryo EM<br />
**[[3ruv]] - MmCPN (mutant) + ATP analog<br />
**[[3ruw]] - MmCpn (mutant) + ADP-AlF3<br />
**[[3ruv]] - MmCpn (mutant) + ATP analog<br />
 
*'''CCT''' or '''TRiC'''


*'''CCT'''
**[[7x7y]] - hCpn CCT – Cryo EM<br />
**[[6krd]], [[6kre]], [[6ks6]], [[6ks8]], [[6qb8]], [[7wz3]], [[7x0a]], [[7x0v]], [[7x3u]], [[8hki]] - hCpn CCT + ADP – Cryo EM<br />
**[[7lum]], [[7x6q]] - hCpn CCT + ATP – Cryo EM<br />
**[[6nr8]], [[6nr9]], [[6nrb]], [[6nrc]], [[6nrd]] - hCpn CCT + HPFD – Cryo EM<br />
**[[7lup]] - hCpn CCT + sigma 3 – Cryo EM<br />
**[[7nvl]], [[7nvo]] - hCpn CCT + nanobody – Cryo EM<br />
**[[7nvn]], [[7trg]], [[7tub]], [[7x3j]] - hCpn CCT + tubulin + ADP – Cryo EM<br />
**[[7wu7]] - hCpn CCT + prefoldin + ADP – Cryo EM<br />
**[[8i1u]], [[8i9u]] - hCpn CCT G + phosducin-like protein + ADP – Cryo EM<br />
**[[7nvm]] - hCpn CCT G + phosducin-like protein + actin + nanobody + ADP – Cryo EM<br />
**[[8sfe]], [[8sff]], [[8sg8]], [[8sg9]], [[8sgc]], [[8sgl]], [[8sgq]], [[8sh9]], [[8sha]], [[8shd]], [[8she]], [[8shf]], [[8shg]], [[8shl]], [[8shn]], [[8sho]], [[8shp]], [[8shq]], [[8sht]] - hCpn CCT G + phosducin-like protein +  guanine nucleotide-binding protein subunit beta-5 + ADP – Cryo EM<br />
**[[2xsm]], [[4b2t]] – bCpn CCT – bovine<BR />
**[[3iyg]], [[4a0o]] - bCpn CCT – Cryo EM<BR />
**[[4a0v]] - bCpn CCT + AMPPNP – Cryo EM<br />
**[[4a0w]] - bCpn CCT + ADP + AlF3 – Cryo EM<br />
**[[4a13]] - bCpn CCT + ADP – Cryo EM<br />
**[[3ktt]] - bCpn CCT β subunit – Cryo EM<BR />
**[[1gml]], [[1gn1]] - Cpn CCT γ subunit apical domain – mouse<br />
**[[4v81]], [[4v94]], [[4v8r]] – Cpn CCT - yeast<br />


**[[2xsm]], [[4b2t]] – bCPN CCT – bovine<BR />
*'''Hsp33''' see [[Heat Shock Proteins]]
**[[4v81]], [[4v94]], [[4v8r]] – CPN CCT - yeast<br />
**[[3iyg]], [[4a0o]] - bCPN CCT – Cryo EM<BR />
**[[4a0v]] - bCPN CCT + AMPPNP – Cryo EM<br />
**[[4a0w]] - bCPN CCT + ADP + AlF3 – Cryo EM<br />
**[[4a13]] - bCPN CCT + ADP – Cryo EM<br />
**[[3ktt]] - bCPN CCT β subunit – Cryo EM<BR />
**[[1gml]], [[1gn1]] - CPN CCT γ subunit apical domain – mouse


*'''Hsp33'''
*'''chaperonin11 or Hsp10'''


See [[Heat Shock Proteins]]
**[[7ekq]] – Chap11 in ClpP complex – ''Chlamydomonas smithii'' – Cryo EM<br />


*'''Thermosome'''
*'''Thermosome'''
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**[[4xcd]] - SsTherm β subunit + ADP – ''Sulfolobus solfataricus''<br />
**[[4xcd]] - SsTherm β subunit + ADP – ''Sulfolobus solfataricus''<br />
**[[4xcg]], [[4xci]] - SsTherm α+β subunits + ADP<br />
**[[4xcg]], [[4xci]] - SsTherm α+β subunits + ADP<br />
 
**[[6xhi]] - SasTherm  subunit + ADP – ''Saccharolobus solfataricus''<br />
**[[1lep]] – CPN-10 – ''Mycobacterium leprae''
**[[6xhj]] - SasTherm  subunit + ATP <br />
**[[1lep]] – Cpn10 – ''Mycobacterium leprae''


*'''Group III'''
*'''Group III'''

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Michal Harel
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