6ef3: Difference between revisions

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-'''Unreleased structure'''
-The entry 6ef3 is ON HOLD
+==Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)==
+<SX load='6ef3' size='340' side='right' viewer='molstar' caption='[[6ef3]], [[Resolution|resolution]] 4.17&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6ef3]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EF3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6EF3 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.17&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ef3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ef3 OCA], [https://pdbe.org/6ef3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ef3 RCSB], [https://www.ebi.ac.uk/pdbsum/6ef3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ef3 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PSB1_YEAST PSB1_YEAST] The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity. PRE3 and PRE4 are necessary for the peptidyl-glutamyl-peptide-hydrolyzing activity.  This subunit is necessary for the peptidylglutamyl-peptide hydrolyzing activity.
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The 26S proteasome is the primary eukaryotic degradation machine and thus critically involved in numerous cellular processes. The hetero-hexameric ATPase motor of the proteasome unfolds and translocates targeted protein substrates into the open gate of a proteolytic core, while a proteasomal deubiquitinase concomitantly removes substrate-attached ubiquitin chains. However, the mechanisms by which ATP hydrolysis drives the conformational changes responsible for these processes have remained elusive. Here we present the cryo-EM structures of four distinct conformational states of the actively ATP-hydrolyzing, substrate-engaged 26S proteasome. These structures reveal how mechanical substrate translocation accelerates deubiquitination, and how ATP-binding, hydrolysis, and phosphate-release events are coordinated within the AAA+ motor to induce conformational changes and propel the substrate through the central pore.
-Authors: de la Pena, A.H., Goodall, E.A., Gates, S.N., Lander, G.C., Martin, A.
+Substrate-engaged 26S proteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.,de la Pena AH, Goodall EA, Gates SN, Lander GC, Martin A Science. 2018 Oct 11. pii: science.aav0725. doi: 10.1126/science.aav0725. PMID:30309908<ref>PMID:30309908</ref>
-Description: Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Martin, A]]
+<div class="pdbe-citations 6ef3" style="background-color:#fffaf0;"></div>
-[[Category: Gates, S.N]]
-[[Category: Lander, G.C]]
+==See Also==
-[[Category: De La Pena, A.H]]
+*[[Proteasome 3D structures|Proteasome 3D structures]]
-[[Category: Goodall, E.A]]
+== References ==
+<references/>
+__TOC__
+</SX>
+[[Category: Large Structures]]
+[[Category: Saccharomyces cerevisiae S288C]]
+[[Category: Gates SN]]
+[[Category: Goodall EA]]
+[[Category: Lander GC]]
+[[Category: Martin A]]
+[[Category: De la Pena AH]]