6p47: Difference between revisions

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-'''Unreleased structure'''
-The entry 6p47 is ON HOLD  until Paper Publication
+==Cryo-EM structure of TMEM16F in digitonin without calcium==
+<SX load='6p47' size='340' side='right' viewer='molstar' caption='[[6p47]], [[Resolution|resolution]] 3.90&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6p47]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6P47 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.9&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6p47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p47 OCA], [https://pdbe.org/6p47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6p47 RCSB], [https://www.ebi.ac.uk/pdbsum/6p47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6p47 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ANO6_MOUSE ANO6_MOUSE] Small-conductance calcium-activated nonselective cation (SCAN) channel which acts as a regulator of phospholipid scrambling in platelets, osteoblasts and fetal thymocytes. Phospholipid scrambling results in surface exposure of phosphatidylserine which in platelets is essential to trigger the clotting system whereas in osteoblasts is essential for the deposition of hydroxyapatite during bone mineralization. Has calcium-dependent phospholipid scramblase activity; scrambles phosphatidylserine, phosphatidylcholine and galactosylceramide. Can generate outwardly rectifying chloride channel currents in airway epithelial cells and Jurkat T lymphocytes.<ref>PMID:21107324</ref> <ref>PMID:21908539</ref> <ref>PMID:22936354</ref> <ref>PMID:23021219</ref> <ref>PMID:23532839</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+As a Ca(2+)-activated lipid scramblase and ion channel that mediates Ca(2+) influx, TMEM16F relies on both functions to facilitate extracellular vesicle generation, blood coagulation, and bone formation. How a bona fide ion channel scrambles lipids remains elusive. Our structural analyses revealed the coexistence of an intact channel pore and PIP2-dependent protein conformation changes leading to membrane distortion. Correlated to the extent of membrane distortion, many tightly bound lipids are slanted. Structure-based mutagenesis studies further reveal that neutralization of some lipid-binding residues or those near membrane distortion specifically alters the onset of lipid scrambling, but not Ca(2+) influx, thus identifying features outside of channel pore that are important for lipid scrambling. Together, our studies demonstrate that membrane distortion does not require open hydrophilic grooves facing the membrane interior and provide further evidence to suggest separate pathways for lipid scrambling and ion permeation.
-Authors: Feng, S., Dang, S., Han, T.W., Ye, W., Jin, P., Cheng, T., Li, J., Jan, Y.N., Jan, L.Y., Cheng, Y.
+Cryo-EM Studies of TMEM16F Calcium-Activated Ion Channel Suggest Features Important for Lipid Scrambling.,Feng S, Dang S, Han TW, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y Cell Rep. 2019 Jul 9;28(2):567-579.e4. doi: 10.1016/j.celrep.2019.06.023. PMID:31291589<ref>PMID:31291589</ref>
-Description: Cryo-EM structure of TMEM16F in digitonin without calcium
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Dang, S]]
+<div class="pdbe-citations 6p47" style="background-color:#fffaf0;"></div>
-[[Category: Cheng, Y]]
-[[Category: Han, T.W]]
+==See Also==
-[[Category: Feng, S]]
+*[[Anoctamin 3D structures|Anoctamin 3D structures]]
-[[Category: Jan, Y.N]]
+== References ==
-[[Category: Cheng, T]]
+<references/>
-[[Category: Li, J]]
+__TOC__
-[[Category: Jin, P]]
+</SX>
-[[Category: Jan, L.Y]]
+[[Category: Large Structures]]
-[[Category: Ye, W]]
+[[Category: Mus musculus]]
+[[Category: Cheng T]]
+[[Category: Cheng Y]]
+[[Category: Dang S]]
+[[Category: Feng S]]
+[[Category: Han TW]]
+[[Category: Jan LY]]
+[[Category: Jan YN]]
+[[Category: Jin P]]
+[[Category: Li J]]
+[[Category: Ye W]]