5vu8: Difference between revisions

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 ==TNA polymerase, closed ternary complex==
-<StructureSection load='5vu8' size='340' side='right' caption='[[5vu8]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+<StructureSection load='5vu8' size='340' side='right'caption='[[5vu8]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5vu8]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"thermococcus_kodakaraensis"_atomi_et_al._2004 "thermococcus kodakaraensis" atomi et al. 2004]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VU8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VU8 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5vu8]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VU8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VU8 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9O7:[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl]+[oxidanyl(phosphonooxy)phosphoryl]+hydrogen+phosphate'>9O7</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=9O4:'>9O4</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9O4:[(3~{R},5~{R})-5-(6-aminopurin-9-yl)oxolan-3-yl]+dihydrogen+phosphate'>9O4</scene>, <scene name='pdbligand=9O7:[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl]+[oxidanyl(phosphonooxy)phosphoryl]+hydrogen+phosphate'>9O7</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vu5|5vu5]], [[5vu6|5vu6]], [[5vu7|5vu7]], [[5vu9|5vu9]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vu8 OCA], [https://pdbe.org/5vu8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vu8 RCSB], [https://www.ebi.ac.uk/pdbsum/5vu8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vu8 ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vu8 OCA], [http://pdbe.org/5vu8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vu8 RCSB], [http://www.ebi.ac.uk/pdbsum/5vu8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vu8 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/D0VWU9_THEKO D0VWU9_THEKO]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 19: / Line 19: @@
 </div>
 <div class="pdbe-citations 5vu8" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Thermococcus kodakaraensis atomi et al. 2004]]
+[[Category: Large Structures]]
-[[Category: DNA-directed DNA polymerase]]
+[[Category: Synthetic construct]]
-[[Category: Chaput, J C]]
+[[Category: Thermococcus kodakarensis]]
-[[Category: Chim, N]]
+[[Category: Chaput JC]]
-[[Category: Protein-nucleic acid complex]]
+[[Category: Chim N]]
-[[Category: Transferase-dna complex]]