5gsr: Difference between revisions

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-'''Unreleased structure'''
-The entry 5gsr is ON HOLD
+==Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide I5A==
+<StructureSection load='5gsr' size='340' side='right'caption='[[5gsr]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5gsr]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GSR FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.198&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gsr OCA], [https://pdbe.org/5gsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gsr RCSB], [https://www.ebi.ac.uk/pdbsum/5gsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gsr ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/HA1D_MOUSE HA1D_MOUSE] Involved in the presentation of foreign antigens to the immune system.
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The coordinated recognition of virus-derived T cell epitopes and MHC molecules by T cells plays a pivotal role in cellular immunity-mediated virus clearance. It has been demonstrated that the conformation of MHC class I (MHC I) molecules can be adjusted by the presented peptide, which impacts T cell activation. However, it is still largely unknown whether the conformational shift of MHC I influences the protective effect of virus-specific T cells. In this study, utilizing the Middle East respiratory syndrome coronavirus-infected mouse model, we observed that through the unusual secondary anchor Ile5, a CD8+ T cell epitope drove the conformational fit of Trp73 on the alpha1 helix of murine MHC I H-2Kd In vitro renaturation and circular dichroism assays indicated that this shift of the structure did not influence the peptide/MHC I binding affinity. Nevertheless, the T cell recognition and the protective effect of the peptide diminished when we made an Ile to Ala mutation at position 5 of the original peptide. The molecular bases of the concordant recognition of T cell epitopes and host MHC-dependent protection were demonstrated through both crystal structure determination and tetramer staining using the peptide-MHC complex. Our results indicate a coordinated MHC I/peptide interaction mechanism and provide a beneficial reference for T cell-oriented vaccine development against emerging viruses such as Middle East respiratory syndrome coronavirus.
-Authors: Liu, K., Chai, Y., Qi, J., Tan, W., Liu, W.J., Gao, G.F.
+Protective T Cell Responses Featured by Concordant Recognition of Middle East Respiratory Syndrome Coronavirus-Derived CD8+ T Cell Epitopes and Host MHC.,Liu WJ, Lan J, Liu K, Deng Y, Yao Y, Wu S, Chen H, Bao L, Zhang H, Zhao M, Wang Q, Han L, Chai Y, Qi J, Zhao J, Meng S, Qin C, Gao GF, Tan W J Immunol. 2017 Jan 15;198(2):873-882. doi: 10.4049/jimmunol.1601542. Epub 2016, Nov 30. PMID:27903740<ref>PMID:27903740</ref>
-Description: Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide I5A
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Gao, G.F]]
+<div class="pdbe-citations 5gsr" style="background-color:#fffaf0;"></div>
-[[Category: Tan, W]]
-[[Category: Liu, W.J]]
+==See Also==
-[[Category: Chai, Y]]
+*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
-[[Category: Liu, K]]
+== References ==
-[[Category: Qi, J]]
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Middle East respiratory syndrome-related coronavirus]]
+[[Category: Mus musculus]]
+[[Category: Chai Y]]
+[[Category: Gao GF]]
+[[Category: Liu K]]
+[[Category: Liu WJ]]
+[[Category: Qi J]]
+[[Category: Tan W]]