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Ribosome 3D structures: Difference between revisions

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**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]], [[5wnq]], [[5wnr]], [[5wns]], [[5wnt]], [[5wnu]], [[5wnv]] - Tt30S ribosomal subunit+THX+16S rRNA – Thermus thermophiles<br />
**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]], [[5wnq]], [[5wnr]], [[5wns]], [[5wnt]], [[5wnu]], [[5wnv]] - Tt30S ribosomal subunit+THX+16S rRNA – Thermus thermophiles<br />
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[6cao]], [[6caq]], [[6cas]]  - Tt30S ribosomal subunit+16S rRNA+RNA fragment<br />
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[6cao]], [[6caq]], [[6cas]]  - Tt30S ribosomal subunit+16S rRNA+RNA fragment<br />
**[[3i1m]], [[3i1o]], [[1i94]], [[1fka]], [[4dr1]] -  Tt30S ribosomal subunit+16S rRNA<br />
**[[4v6c]], [[1i94]], [[1fka]], [[4dr1]] -  Tt30S ribosomal subunit+16S rRNA<br />
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S rRNA (mutant)<br />
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S rRNA (mutant)<br />
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S rRNA + mRNA<br />
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S rRNA + mRNA<br />
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**[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br />  
**[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br />  
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br />
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br />
**[[3v6u]], [[3v6v]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br />
**[[4v8j]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br />


**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA<br />
**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA<br />
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**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] -  Tt30S ribosomal subunit+16S rRNA+antibiotic<br />
**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] -  Tt30S ribosomal subunit+16S rRNA+antibiotic<br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br />
**[[3knj]], [[3knh]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br />
**[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br />
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br />
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br />
**[[6ypu]], [[6ytf]], [[7m4u]] – Ab30S + antibiotic - Cryo EM<br />
**[[6ypu]], [[6ytf]], [[7m4u]] – Ab30S + antibiotic - Cryo EM<br />
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*30S subunit + ribosome recycling factor
*30S subunit + ribosome recycling factor


**[[3r8n]], [[3r8o]] - Ec30S ribosomal subunit+16S rRNA+ribosome recycling factor + mRNA + tRNA  <br />
**[[4v9d]] - Ec30S ribosomal subunit+16S rRNA+ribosome recycling factor + mRNA + tRNA  <br />


*30S subunit + elongation factor
*30S subunit + elongation factor
   
   
**[[4btc]] - Tt30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor G<br />
**[[4v90]] - Tt30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor G<br />
**[[6enu]] - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM<br />
**[[6enu]] - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM<br />


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**[[2ftc]] – b50S subunit – bovine - Cryo_EM<br />
**[[2ftc]] – b50S subunit – bovine - Cryo_EM<br />
**[[5mmi]], [[5x8t]] – s50S ribosomal subunit - Cryo-EM<br />
**[[5mmi]], [[5x8t]] – s50S ribosomal subunit - Cryo-EM<br />
**[[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3v6w]], [[3v6x]], [[3zne]], [[4k0m]], [[4k0q]] -  Tt50S subunit <br />
**[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] -  Tt50S subunit <br />
**[[3i1n]], [[3i1p]] - Ec50S subunit<br />  
**[[4v6c]] - Ec50S subunit<br />  
**[[6gbz]], [[6gc0]], [[6gc4]], [[6gc6]], [[6gc7]], [[6gc8]], [[6ofx]], [[6wnt]], [[7bv8]], [[7lv0]], [[7lvk]], [[8c91]] - Ec50S subunit - Cryo_EM<br />
**[[6gbz]], [[6gc0]], [[6gc4]], [[6gc6]], [[6gc7]], [[6gc8]], [[6ofx]], [[6wnt]], [[7bv8]], [[7lv0]], [[7lvk]], [[8c91]] - Ec50S subunit - Cryo_EM<br />
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit – Deinococcus radiodurans<br />
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit – Deinococcus radiodurans<br />
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**[[3jct]], [[6m62]], [[7ug6]] – ypre-60S subunit - Cryo EM<br />
**[[3jct]], [[6m62]], [[7ug6]] – ypre-60S subunit - Cryo EM<br />
**[[7z34]] – ypre-60S subunit + DRG1 - Cryo EM<br />
**[[7z34]] – ypre-60S subunit + DRG1 - Cryo EM<br />
**[[4vf7]] – ypre-60S subunit + Arx1 - Cryo EM<br />
**[[4v7f]] – ypre-60S subunit + Arx1 - Cryo EM<br />
**[[8hfr]] – ypre-60S subunit + NPC - Cryo EM<br />
**[[8hfr]] – ypre-60S subunit + NPC - Cryo EM<br />
**[[5jcs]] – ypre-60S subunit + Rix1 + Rea1 - Cryo EM<br />
**[[5jcs]] – ypre-60S subunit + Rix1 + Rea1 - Cryo EM<br />
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*60S subunit + various proteins
*60S subunit + various proteins


**[[3j3b]] – h60S subunit + P0 + P1 + P2 - Cryo EM<br />
**[[4v6x]] – h60S subunit + P0 + P1 + P2 - Cryo EM<br />
**[[7ow7]] – h60S subunit + eIF6 - Cryo EM<br />
**[[7ow7]] – h60S subunit + eIF6 - Cryo EM<br />
**[[8a3d]] – h60S subunit + eIF6 + antibiotics - Cryo EM<br />
**[[8a3d]] – h60S subunit + eIF6 + antibiotics - Cryo EM<br />
**[[7f5s]] – h60S subunit + METTL18 - Cryo EM<br />
**[[7f5s]] – h60S subunit + METTL18 - Cryo EM<br />
**[[6swa]] – m60S subunit + Ebp1 - Cryo EM<br />
**[[6swa]] – m60S subunit + Ebp1 - Cryo EM<br />
**[[3izs]] – y60S subunit + P0 + P1 + P2 - Cryo EM<br />
**[[4v6i]] – y60S subunit + P0 + P1 + P2 - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[3o5h]] – y60S subunit + 5S rRNA + 5.8S rRNA + 25S rRNA + P0<br />
**[[4v7r]] – y60S subunit + 5S rRNA + 5.8S rRNA + 25S rRNA + P0<br />
**[[6em5]], [[6em4]], [[6em3]], [[6elz]], [[6em1]] – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br />
**[[6em5]], [[6em4]], [[6em3]], [[6elz]], [[6em1]] – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br />
**[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br />
**[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br />
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**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br />
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br />
**[[3j39]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
**[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
**[[4v8p]] - Tet60S subunit+ 26S rRNA+ translation initiation factor 6 <br />
**[[4v8p]] - Tet60S subunit+ 26S rRNA+ translation initiation factor 6 <br />


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*80S ribosome  
*80S ribosome  


**[[4ug0]], [[5t2c]], [[6ip5]], [[6ek0]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]], [[7xnx]], [[7xny]], [[7zfw]], [[8g5y]], [[8g5z]], [[[8g60]], [8g6j]] – hRibosome - Cryo-EM<br />
**[[4ug0]], [[5t2c]], [[6ip5]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]], [[7xnx]], [[7xny]], [[7zfw]], [[8g5y]], [[8g5z]], [[[8g60]], [8g6j]] – hRibosome - Cryo-EM<br />
**[[4v5z]] -  dRibosome – dog - Cryo-EM <br />
**[[4v5z]] -  dRibosome – dog - Cryo-EM <br />
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br />
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br />
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*Mitoribosome or mitochondrial ribosome
*Mitoribosome or mitochondrial ribosome


*28S small subunit  
*Mitoribosome 28S small subunit  


**[[7po3]], [[8csr]], [[8css]], [[8csu]] – h28S ribosomal subunit - Cryo-EM<br />
**[[7po3]], [[8csr]], [[8css]], [[8csu]] – h28S ribosomal subunit - Cryo-EM<br />
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**[[3iy8]] – 28S ribosomal subunit – Leishmania arentolae - Cryo-EM<br />
**[[3iy8]] – 28S ribosomal subunit – Leishmania arentolae - Cryo-EM<br />


*39S large subunit  
*Mitoribosome 39S large subunit  


**[[5oom]], [[7od4]], [[7ods]], [[7odt]], [[7of4]], [[7of6]], [[7oi6]], [[7oi7]], [[7oi8]], [[7oi9]], [[7oia]], [[7oib]], [[7oic]], [[7oid]], [[7oie]] – h39S ribosomal subunit - Cryo-EM<br />
**[[5oom]], [[7od4]], [[7ods]], [[7odt]], [[7of4]], [[7of6]], [[7oi6]], [[7oi7]], [[7oi8]], [[7oi9]], [[7oia]], [[7oib]], [[7oic]], [[7oid]], [[7oie]] – h39S ribosomal subunit - Cryo-EM<br />
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**[[6yws]] – Nc39S - Cryo-EM<br />
**[[6yws]] – Nc39S - Cryo-EM<br />


*55S small+large mitoribosome
*Mitoribosome 55S small+large subunits


**[[3j9m]] – h55S - Cryo EM<br />
**[[3j9m]] – h55S - Cryo EM<br />

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky, Alexander Berchansky, Wayne Decatur, Michal Harel, Joel L. Sussman
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