4m40: Difference between revisions

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-{{STRUCTURE_4m40|  PDB=4m40  |  SCENE=  }}
-===Crystal structure of hemagglutinin of influenza virus B/Yamanashi/166/1998===
-{{ABSTRACT_PUBMED_24074573}}
-==About this Structure==
+==Crystal structure of hemagglutinin of influenza virus B/Yamanashi/166/1998==
-[[4m40]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_b_virus_(b/yamanashi/166/1998) Influenza b virus (b/yamanashi/166/1998)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M40 OCA].
+<StructureSection load='4m40' size='340' side='right'caption='[[4m40]], [[Resolution|resolution]] 3.54&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4m40]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_B_virus_(B/Yamanashi/166/1998) Influenza B virus (B/Yamanashi/166/1998)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M40 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.54&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m40 OCA], [https://pdbe.org/4m40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m40 RCSB], [https://www.ebi.ac.uk/pdbsum/4m40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m40 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A3DQM7_9INFB A3DQM7_9INFB] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore (By similarity).[RuleBase:RU003324]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Influenza A and B viruses are responsible for the severe morbidity and mortality worldwide in annual influenza epidemics. Currently circulating influenza B virus belongs to the B/Victoria or B/Yamagata lineage that was diverged from each other about 30-40 years ago. However, a mechanistic understanding of their divergent evolution is still lacking. Here we report the crystal structures of influenza B/Yamanashi/166/1998 hemagglutinin (HA) belonging to B/Yamagata lineage and its complex with the avian-like receptor analogue. Comparison of these structures with those of undiverged and diverged influenza B virus HAs, in conjunction with sequence analysis, reveals the molecular basis for the divergent evolution of influenza B virus HAs. Furthermore, HAs of diverged influenza B virus strains display much stronger molecular interactions with terminal sialic acid of bound receptors, which may allow for a different tissue tropism for current influenza B viruses, for which further investigation is required.
-==Reference==
+Structural basis for the divergent evolution of influenza B virus hemagglutinin.,Ni F, Kondrashkina E, Wang Q Virology. 2013 Nov;446(1-2):112-22. doi: 10.1016/j.virol.2013.07.035. Epub 2013, Aug 27. PMID:24074573<ref>PMID:24074573</ref>
-<ref group="xtra">PMID:024074573</ref><references group="xtra"/><references/>
-[[Category: Kondrashkina, E.]]
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Ni, F.]]
+</div>
-[[Category: Wang, Q.]]
+<div class="pdbe-citations 4m40" style="background-color:#fffaf0;"></div>
-[[Category: Fusion]]
-[[Category: Receptor binding]]
+==See Also==
-[[Category: Sialic acid]]
+*[[Hemagglutinin 3D structures|Hemagglutinin 3D structures]]
-[[Category: Viral protein]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Kondrashkina E]]
+[[Category: Ni F]]
+[[Category: Wang Q]]