4ko4: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{STRUCTURE_4ko4|  PDB=4ko4  |  SCENE=  }}
-===High X-ray dose structure of anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air===
-{{ABSTRACT_PUBMED_23811828}}
-==About this Structure==
+==High X-ray dose structure of anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air==
-[[4ko4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfomicrobium_baculatum Desulfomicrobium baculatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KO4 OCA].
+<StructureSection load='4ko4' size='340' side='right'caption='[[4ko4]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4ko4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfomicrobium_baculatum Desulfomicrobium baculatum] and [https://en.wikipedia.org/wiki/Desulfomicrobium_baculatum_DSM_4028 Desulfomicrobium baculatum DSM 4028]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KO4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KO4 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=H2S:HYDROSULFURIC+ACID'>H2S</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SE7:2-AMINO-3-SELENINO-PROPIONIC+ACID'>SE7</scene>, <scene name='pdbligand=UOX:3-(OXIDO-LAMBDA~4~-SELANYL)-L-ALANINE'>UOX</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ko4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ko4 OCA], [https://pdbe.org/4ko4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ko4 RCSB], [https://www.ebi.ac.uk/pdbsum/4ko4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ko4 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PHSS_DESBA PHSS_DESBA]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+This study shows how the NiFeSe site of an anaerobically purified O2-resistant hydrogenase reacts with air to give a seleninate as the first product. Less oxidized states of the active site are readily reduced in the presence of X-rays. Reductive enzyme activation requires an efficient pathway for water escape.
-==Reference==
+Structural foundations for the O2 resistance of Desulfomicrobium baculatum [NiFeSe]-hydrogenase.,Volbeda A, Amara P, Iannello M, De Lacey AL, Cavazza C, Fontecilla-Camps JC Chem Commun (Camb). 2013 Jul 11;49(63):7061-3. doi: 10.1039/c3cc43619e. PMID:23811828<ref>PMID:23811828</ref>
-<ref group="xtra">PMID:023811828</ref><references group="xtra"/><references/>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 4ko4" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Desulfomicrobium baculatum]]
-[[Category: Cavazza, C.]]
+[[Category: Desulfomicrobium baculatum DSM 4028]]
-[[Category: Fontecilla-Camps, J C.]]
+[[Category: Large Structures]]
-[[Category: Volbeda, A.]]
+[[Category: Cavazza C]]
-[[Category: H2 cleavage/production]]
+[[Category: Fontecilla-Camps JC]]
-[[Category: Nifese-site]]
+[[Category: Volbeda A]]
-[[Category: Oxidoreductase]]
-[[Category: Seleninate]]