4flx: Difference between revisions

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 ==Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode==
-<StructureSection load='4flx' size='340' side='right' caption='[[4flx]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+<StructureSection load='4flx' size='340' side='right'caption='[[4flx]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4flx]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrab Pyrab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FLX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FLX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4flx]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi_GE5 Pyrococcus abyssi GE5] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FLX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FLX FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DI:2-DEOXYINOSINE-5-MONOPHOSPHATE'>DI</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4flt|4flt]], [[4flu|4flu]], [[4flv|4flv]], [[4flw|4flw]], [[4fly|4fly]], [[4flz|4flz]], [[4fm0|4fm0]], [[4fm1|4fm1]], [[4fm2|4fm2]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4flx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4flx OCA], [https://pdbe.org/4flx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4flx RCSB], [https://www.ebi.ac.uk/pdbsum/4flx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4flx ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">polI, pol, PYRAB17200, PAB1128 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272844 PYRAB])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4flx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4flx OCA], [http://pdbe.org/4flx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4flx RCSB], [http://www.ebi.ac.uk/pdbsum/4flx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4flx ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPOL_PYRAB DPOL_PYRAB]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 21: @@
 ==See Also==
-*[[DNA polymerase|DNA polymerase]]
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: DNA-directed DNA polymerase]]
+[[Category: Large Structures]]
-[[Category: Pyrab]]
+[[Category: Pyrococcus abyssi GE5]]
-[[Category: Delarue, M]]
+[[Category: Synthetic construct]]
-[[Category: Gouge, J]]
+[[Category: Delarue M]]
-[[Category: Dna binding]]
+[[Category: Gouge J]]
-[[Category: Dna polymerase]]
-[[Category: Transferase-dna complex]]