4f35: Difference between revisions

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-[[Image:4f35.jpg|left|200px]]
-{{STRUCTURE_4f35|  PDB=4f35  |  SCENE=  }}
+==Crystal Structure of a bacterial dicarboxylate/sodium symporter==
+<StructureSection load='4f35' size='340' side='right'caption='[[4f35]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4f35]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F35 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F35 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.196&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f35 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f35 OCA], [https://pdbe.org/4f35 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f35 RCSB], [https://www.ebi.ac.uk/pdbsum/4f35 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f35 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9KNE0_VIBCH Q9KNE0_VIBCH]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+In human cells, cytosolic citrate is a chief precursor for the synthesis of fatty acids, triacylglycerols, cholesterol and low-density lipoprotein. Cytosolic citrate further regulates the energy balance of the cell by activating the fatty-acid-synthesis pathway while downregulating both the glycolysis and fatty-acid beta-oxidation pathways. The rate of fatty-acid synthesis in liver and adipose cells, the two main tissue types for such synthesis, correlates directly with the concentration of citrate in the cytosol, with the cytosolic citrate concentration partially depending on direct import across the plasma membrane through the Na(+)-dependent citrate transporter (NaCT). Mutations of the homologous fly gene (Indy; I'm not dead yet) result in reduced fat storage through calorie restriction. More recently, Nact (also known as Slc13a5)-knockout mice have been found to have increased hepatic mitochondrial biogenesis, higher lipid oxidation and energy expenditure, and reduced lipogenesis, which taken together protect the mice from obesity and insulin resistance. To understand the transport mechanism of NaCT and INDY proteins, here we report the 3.2 A crystal structure of a bacterial INDY homologue. One citrate molecule and one sodium ion are bound per protein, and their binding sites are defined by conserved amino acid motifs, forming the structural basis for understanding the specificity of the transporter. Comparison of the structures of the two symmetrical halves of the transporter suggests conformational changes that propel substrate translocation.
-===Crystal Structure of a bacterial dicarboxylate/sodium symporter===
+Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter.,Mancusso R, Gregorio GG, Liu Q, Wang DN Nature. 2012 Nov 22;491(7425):622-6. doi: 10.1038/nature11542. Epub 2012 Oct 21. PMID:23086149<ref>PMID:23086149</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 4f35" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-[[4f35]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F35 OCA].
+*[[Symporter 3D structures|Symporter 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Vibrio cholerae]]
-[[Category: Gregorio, G G.]]
+[[Category: Gregorio GG]]
-[[Category: Liu, Q.]]
+[[Category: Liu Q]]
-[[Category: Mancusso, R L.]]
+[[Category: Mancusso RL]]
-[[Category: Wang, D N.]]
+[[Category: Wang DN]]
-[[Category: Transport protein]]
-[[Category: Transporter]]