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User:Karsten Theis/Sandbox 1: Difference between revisions

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<applet size='[450,338]' frame='true' align='right'  
<applet size='[450,338]' frame='true' align='right'  
scene='User:Karsten_Theis/Sandbox_1/Fig1/1'  
scene='User:Karsten_Theis/Sandbox_1/Globe3/2'  
caption='UvrB' />  
caption='UvrB' />  
yo
 
<ref>DOI:10.1002/open.201300012</ref>
 
Here is the <scene name='49/491982/Pentane/1'>pentane</scene> molecule. Here is how it can rotate around its single bonds to get a different conformation:
 
<jmol>
<jmolLink>
  <script>  var a = [1,2,3,4,5,6,7,8,9,10]; var b = [1,2,3,4,5,6,7,8,9,10]; for(var i IN a) {for(var i IN b){set refreshing false; rotate branch {C3}{C4} 5; rotate branch {C3}{C2} 2; set refreshing true; delay 0.05}}
  </script>
  <text>rotate</text>
</jmolLink>
</jmol>
 
<jmol>
<jmolLink>
  <script>  load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10
  </script>
  <text>Simpler, single command script</text>
</jmolLink>
</jmol>
 
 
 
 
load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10
 
For large structures, use label "%D" to find numbers of selected atoms.
 
 
 
 
<scene name='User:Karsten_Theis/Sandbox_1/Globe2/1'>Proteopedia</scene>
 


<scene name='User:Karsten_Theis/Sandbox_1/Fig1/1'>UvrB</scene>
<scene name='User:Karsten_Theis/Sandbox_1/Fig1/1'>UvrB</scene>
<scene name='User:Karsten_Theis/Sandbox_1/Globe3/1'>Fancy</scene>
<scene name='49/491982/Proinsulin/1'>insulin</scene>
<scene name='49/491982/Proinsulin/6'>insulin surface</scene>
<scene name='49/491982/Amyloid_stack_2m5n/2'>amyloid aggregate</scene>
<scene name='49/491982/1bna/1'>DNA</scene>
<scene name='49/491982/1bna/3'>DNA different orientation</scene>
<jmol>
<jmolLink>
  <script> slab on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}
  </script>
  <text>Fade surface to invisible</text>
</jmolLink>
</jmol> (basic)
== Table ==
<table>
  <tr>
    <td>[http://www.google.com W2]<br> [[Image:Insulin.gif|link=Insulin]]</td>
    <td>[[Image:Insulin.gif]]</td>
    <td>[[Image:Insulin.gif]]</td>
  </tr>
  <tr>
    <td>[[Image:Insulin.gif]]</td>
    <td>[[Image:Insulin.gif]]</td>
    <td>[[Image:Insulin.gif]]</td>
  </tr>
  <tr>
    <td>[[Image:Insulin.gif]]</td>
    <td>[[Image:Insulin.gif]]</td>
    <td>[[Image:Insulin.gif]]</td>
  </tr>
</table>
== References ==
<references/>
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