4dvv: Difference between revisions

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 ==Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AS-I-261==
-<StructureSection load='4dvv' size='340' side='right' caption='[[4dvv]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
+<StructureSection load='4dvv' size='340' side='right'caption='[[4dvv]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4dvv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DVV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DVV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4dvv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DVV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DVV FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0M1:N-{[(4S,5S)-5-(AMINOMETHYL)-2,2-DIMETHYL-1,3-DIOXOLAN-4-YL]METHYL}-N-(4-CHLORO-3-FLUOROPHENYL)ETHANEDIAMIDE'>0M1</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dvr|4dvr]], [[4dvs|4dvs]], [[4dvt|4dvt]], [[4dvu|4dvu]], [[4dvw|4dvw]], [[4dvx|4dvx]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0M1:N-{[(4S,5S)-5-(AMINOMETHYL)-2,2-DIMETHYL-1,3-DIOXOLAN-4-YL]METHYL}-N-(4-CHLORO-3-FLUOROPHENYL)ETHANEDIAMIDE'>0M1</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">env, HIV-1 Env ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 9HIV1])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dvv OCA], [https://pdbe.org/4dvv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dvv RCSB], [https://www.ebi.ac.uk/pdbsum/4dvv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dvv ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dvv OCA], [http://pdbe.org/4dvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dvv RCSB], [http://www.ebi.ac.uk/pdbsum/4dvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dvv ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/Q0ED31_9HIV1 Q0ED31_9HIV1]] The envelope glyprotein gp160 precursor down-modulates cell surface CD4 antigen by interacting with it in the endoplasmic reticulum and blocking its transport to the cell surface (By similarity).[RuleBase:RU004292][SAAS:SAAS000328_004_020447]  The gp120-gp41 heterodimer allows rapid transcytosis of the virus through CD4 negative cells such as simple epithelial monolayers of the intestinal, rectal and endocervical epithelial barriers. Both gp120 and gp41 specifically recognize glycosphingolipids galactosyl-ceramide (GalCer) or 3' sulfo-galactosyl-ceramide (GalS) present in the lipid rafts structures of epithelial cells. Binding to these alternative receptors allows the rapid transcytosis of the virus through the epithelial cells. This transcytotic vesicle-mediated transport of virions from the apical side to the basolateral side of the epithelial cells does not involve infection of the cells themselves (By similarity).
+[https://www.uniprot.org/uniprot/A0A0M3KKW9_9HIV1 A0A0M3KKW9_9HIV1]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 19: @@
 </div>
 <div class="pdbe-citations 4dvv" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Gp120 3D structures|Gp120 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Kwon, Y D]]
+[[Category: Human immunodeficiency virus 1]]
-[[Category: Kwong, P D]]
+[[Category: Large Structures]]
-[[Category: As-i-261]]
+[[Category: Kwon YD]]
-[[Category: Cd4 binding site]]
+[[Category: Kwong PD]]
-[[Category: Hiv-1 gp120]]
-[[Category: Small molecule inhibitor]]
-[[Category: Viral protein-transcription inhibitor complex]]