3tpf: Difference between revisions

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 ==Crystal structure of anabolic ornithine carbamoyltransferase from Campylobacter jejuni subsp. jejuni NCTC 11168==
-<StructureSection load='3tpf' size='340' side='right' caption='[[3tpf]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+<StructureSection load='3tpf' size='340' side='right'caption='[[3tpf]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3tpf]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni Campylobacter jejuni subsp. jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TPF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TPF FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3tpf]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TPF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TPF FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1c9y|1c9y]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tpf OCA], [https://pdbe.org/3tpf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tpf RCSB], [https://www.ebi.ac.uk/pdbsum/3tpf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tpf ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argF, Cj0994c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32022 Campylobacter jejuni subsp. jejuni])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ornithine_carbamoyltransferase Ornithine carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.3 2.1.3.3] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tpf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tpf RCSB], [http://www.ebi.ac.uk/pdbsum/3tpf PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/OTCA_CAMJE OTCA_CAMJE] Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline, which is a substrate for argininosuccinate synthetase (ArgG) involved in the final step in arginine biosynthesis.<ref>PMID:22949186</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 18: / Line 18: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3tpf" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Ornithine carbamoyltransferase|Ornithine carbamoyltransferase]]
+*[[Ornithine carbamoyltransferase 3D structures|Ornithine carbamoyltransferase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Campylobacter jejuni subsp. jejuni]]
+[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
-[[Category: Ornithine carbamoyltransferase]]
+[[Category: Large Structures]]
-[[Category: Anderson, W F.]]
+[[Category: Anderson WF]]
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+[[Category: Chruszcz M]]
-[[Category: Chruszcz, M.]]
+[[Category: Grabowski M]]
-[[Category: Grabowski, M.]]
+[[Category: Grimshaw S]]
-[[Category: Grimshaw, S.]]
+[[Category: Minor W]]
-[[Category: Minor, W.]]
+[[Category: Onopriyenko O]]
-[[Category: Onopriyenko, O.]]
+[[Category: Porebski PJ]]
-[[Category: Porebski, P J.]]
+[[Category: Savchenko A]]
-[[Category: Savchenko, A.]]
+[[Category: Shabalin IG]]
-[[Category: Shabalin, I G.]]
-[[Category: Carbamoyl phosphate binding]]
-[[Category: Center for structural genomics of infectious disease]]
-[[Category: Csgid]]
-[[Category: L-ornithine binding]]
-[[Category: Rossmann fold]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]