3tcf: Difference between revisions

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OCA

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 ==Crystal structure of E. coli OppA complexed with endogenous ligands==
-<StructureSection load='3tcf' size='340' side='right' caption='[[3tcf]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='3tcf' size='340' side='right'caption='[[3tcf]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3tcf]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TCF FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3tcf]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TCF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TCF FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3tch|3tch]], [[3tcg|3tcg]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tcf OCA], [https://pdbe.org/3tcf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tcf RCSB], [https://www.ebi.ac.uk/pdbsum/3tcf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tcf ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b1243, JW1235, oppA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+</table>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tcf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tcf RCSB], [http://www.ebi.ac.uk/pdbsum/3tcf PDBsum]</span></td></tr>
+== Function ==
-<table>
+[https://www.uniprot.org/uniprot/OPPA_ECOLI OPPA_ECOLI] This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 14: / Line 15: @@
 Escherichia coli peptide binding protein OppA has a preference for positively charged peptides.,Klepsch MM, Kovermann M, Low C, Balbach J, Permentier HP, Fusetti F, de Gier JW, Slotboom DJ, Berntsson RP J Mol Biol. 2011 Nov 18;414(1):75-85. Epub 2011 Oct 1. PMID:21983341<ref>PMID:21983341</ref>
-From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3tcf" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[ABC transporter 3D structures|ABC transporter 3D structures]]
 == References ==
 <references/>
@@ Line 21: / Line 26: @@
 </StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Balbach, J.]]
+[[Category: Escherichia coli K-12]]
-[[Category: Berntsson, R P.A.]]
+[[Category: Large Structures]]
-[[Category: Gier, J W.de.]]
+[[Category: Balbach J]]
-[[Category: Klepsch, M M.]]
+[[Category: Berntsson RP-A]]
-[[Category: Kovermann, M.]]
+[[Category: Klepsch MM]]
-[[Category: Low, C.]]
+[[Category: Kovermann M]]
-[[Category: Slotboom, D J.]]
+[[Category: Low C]]
-[[Category: Abc transporter]]
+[[Category: Slotboom DJ]]
-[[Category: Peptide transport]]
+[[Category: De Gier JW]]
-[[Category: Peptide-binding protein]]
-[[Category: Protein transport]]