3q3v: Difference between revisions

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-[[Image:3q3v.png|left|200px]]
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+==Crystal structure of Phosphoglycerate Kinase from Campylobacter jejuni.==
-The line below this paragraph, containing "STRUCTURE_3q3v", creates the "Structure Box" on the page.
+<StructureSection load='3q3v' size='340' side='right'caption='[[3q3v]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3q3v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q3V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q3V FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.145&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3q3v|  PDB=3q3v  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q3v OCA], [https://pdbe.org/3q3v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q3v RCSB], [https://www.ebi.ac.uk/pdbsum/3q3v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q3v ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PGK_CAMJE PGK_CAMJE]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Phosphoglycerate kinase (PGK) is indispensable during glycolysis for anaerobic glucose degradation and energy generation. Here we present comprehensive structure analysis of two putative PGKs from Bacillus anthracis str. Sterne and Campylobacter jejuni in the context of their structural homologs. They are the first PGKs from pathogenic bacteria reported in the Protein Data Bank. The crystal structure of PGK from Bacillus anthracis str. Sterne (BaPGK) has been determined at 1.68 A while the structure of PGK from Campylobacter jejuni (CjPGK) has been determined at 2.14 A resolution. The proteins' monomers are composed of two domains, each containing a Rossmann fold, hinged together by a helix which can be used to adjust the relative position between two domains. It is also shown that apo-forms of both BaPGK and CjPGK adopt open conformations as compared to the substrate and ATP bound forms of PGK from other species.
-===Crystal structure of Phosphoglycerate Kinase from Campylobacter jejuni.===
+Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.,Zheng H, Filippova EV, Tkaczuk KL, Dworzynski P, Chruszcz M, Porebski PJ, Wawrzak Z, Onopriyenko O, Kudritska M, Grimshaw S, Savchenko A, Anderson WF, Minor W J Struct Funct Genomics. 2012 Mar;13(1):15-26. Epub 2012 Mar 10. PMID:22403005<ref>PMID:22403005</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3q3v" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-[[3q3v]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_nctc_11168 Campylobacter jejuni subsp. jejuni nctc 11168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q3V OCA].
+*[[Phosphoglycerate kinase 3D structures|Phosphoglycerate kinase 3D structures]]
-[[Category: Campylobacter jejuni subsp. jejuni nctc 11168]]
+== References ==
-[[Category: Phosphoglycerate kinase]]
+<references/>
-[[Category: Anderson, W F.]]
+__TOC__
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+</StructureSection>
-[[Category: Edwards, A.]]
+[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
-[[Category: Filippova, E V.]]
+[[Category: Large Structures]]
-[[Category: Onopriyenko, O.]]
+[[Category: Anderson WF]]
-[[Category: Savchenko, A.]]
+[[Category: Edwards A]]
-[[Category: Wawrzak, Z.]]
+[[Category: Filippova EV]]
+[[Category: Onopriyenko O]]
+[[Category: Savchenko A]]
+[[Category: Wawrzak Z]]