ATPase: Difference between revisions

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[[ATPase]] is an enzyme which catalyzes the breakdown of ATP into ADP and a phosphate ion.  This dephosphorylation releases energy which the enzyme uses to drive other reactions.  ATPase types include:<br />
[[ATPase]] is an enzyme which catalyzes the breakdown of [[ATP]] into ADP and a phosphate ion.  This dephosphorylation releases energy which the enzyme uses to drive other reactions<ref>PMID:15078220</ref>. The F1/0 ATPase is called '''ATP synthase''' synthesises the reverse reaction, i.e., the addition of phosphate to ADP to form ATP<ref>PMID:30888962</ref>.  ATPase types include:<br />
* '''F-ATPase''' - the prime producers of ATP;<br /> <!--Should there be a F-ATPase page for this like thee is for V-ATPase below? If one is made, I'd like to see links to the animations/movies referenced at https://twitter.com/NathanRoberts17/status/943428752113094656 there.-->
* '''F-ATPase''' - the prime producers of ATP<ref>PMID:8065448</ref>.  For details see [[Alice Clark/ATPsynthase]];<br /> <!--Should there be a F-ATPase page for this like thee is for V-ATPase below? If one is made, I'd like to see links to the animations/movies referenced at https://twitter.com/NathanRoberts17/status/943428752113094656 there.-->
* '''V-ATPase''' or Vacuolar-type H+ ATPase couples the energy to proton transport across membranes.  For details see [[V-ATPase]];<br />
* '''V-ATPase''' or Vacuolar-type H+ ATPase couples the energy to proton transport across membranes.   
 
ATPase is inhibited by [[Bedaquiline]] which is used as TB drug<ref>PMID:28807917</ref>.
 
For details see [[V-ATPase]];<br />
* '''A-ATPase''' are found in archaea.  For details see [[A-ATP Synthase]];<br />
* '''A-ATPase''' are found in archaea.  For details see [[A-ATP Synthase]];<br />
* '''P-ATPase''' transport ions;<br />
* '''P-ATPase''' transport ions<ref>PMID:20962537</ref><br />
* '''E-ATPase''' hydrolyze extracellular ATP.  <br />
* '''E-ATPase''' hydrolyze extracellular ATP<ref>PMID:7721538</ref>.  <br />
*  '''MipZ''' is an ATPase which forms a complex with the chromosome partitioning protein ParB and is responsible for the regulation of FtsZ ring formation.<br />
*  '''MipZ''' is an ATPase which forms a complex with the chromosome partitioning protein ParB and is responsible for the regulation of FtsZ ring formation.<br />
ATPase domains include metal-binding domain (MBD) and nucleotide-binding domain (NBD). For more details see:<br />
ATPase domains include metal-binding domain (MBD) and nucleotide-binding domain (NBD). For more details see:<br />
*Cu transporting ATPase are in [[P(1B)-Type Cu(I) Transporting ATPases ATP7A and ATP7B]].<br />
* '''ATPase RavA''' participates in the pathway which response to ahminoglycosides under anaerobic conditions and cell membrane regulation<ref>PMID:36127320</ref>.  <br />
*Na/K transporting ATPase are in [[Sodium-Potassium ATPase]].<br />
* '''ATPase InvC''' energizes the apparatus needed for the entry of ''Salmonella typhimurium'' into mammalian cells<ref>PMID:8045880</ref>.  <br />
*H/K transporting ATPase are in [[Esomeprazole and H+/K+ - ATPase Interaction]].<br />
* '''Peroxisomal ATPase''' Pex1/Pex6 is essential for peroxisome formation<ref>PMID:37741838</ref>.  <br />
*Transitional endoplasmic reticulum ATPase are in [[Valosin Containing Protein D120]].<br />
* '''INO8o ATPase''' is a component of the chromatin remodelling complex<ref>PMID:19062292</ref>.  <br />
*Central stalk in F(1)-ATPase is described in [[A-ATP Synthase]]<br />
*'''Cu transporting ATPase''' are in [[P(1B)-Type Cu(I) Transporting ATPases ATP7A and ATP7B]].<br />
*'''Na/K transporting ATPase''' are in [[Sodium-Potassium ATPase]].<br />
*'''H/K transporting ATPase''' are in [[Esomeprazole and H+/K+ - ATPase Interaction]].<br />
*'''Transitional endoplasmic reticulum ATPase''' are in [[Valosin Containing Protein D120]].<br />
*'''Central stalk in F(1)-ATPase''' is described in [[A-ATP Synthase]]<br />
*[[Journal:JSB:1|RuvBL1/RuvBL2 complex (ATPase)]]<br />
*[[Journal:JSB:1|RuvBL1/RuvBL2 complex (ATPase)]]<br />
*For Ter-ATPase see [[Valosin Containing Protein D120]]




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</StructureSection>
</StructureSection>


== 3D Structures of ATPase ==


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
==3D Printed Physical Model of ATP Synthase==
{{#tree:id=OrganizedByTopic|openlevels=0|


*'''F-ATPase'''
Shown below is a 3D printed physical model of the Respiration Electron Transport Chain. Complex I is colored red, complex II is purple, complex III is green, complex IV is blue and the atp synthase protein is colored orange, yellow and red.
[[Image:atpSynthase1_centerForBioMolecularModeling.jpg |550px]]


*''F1F0 ATPase α subunit''


**[[2jmx]] - bF1-ATPS+subunit O<br />
====The MSOE Center for BioMolecular Modeling====
**[[2r9v]] - F1-ATPS – ''Thermotoga maritima''
 
*''F1F0 ATPase β subunit''
 
**[[1b9u]] – EcF1-ATPS membrane domain – ''Escherichia coli'' -NMR<BR />
**[[4utq]] – EcF1-ATPS membrane domain + insertase YIDC – Cryo EM<BR />
**[[1l2p]] – EcF1-ATPS dimerization domain<br />
**[[2khk]] - EcF1-ATPS fragment – NMR<BR />
**[[1pyv]] - F1-ATPS – NMR – tobacco<br />
**[[4q4l]] - F1-ATPS – ''Burkholderia thailandensis''<br />
 
*''F1F0 ATPase γ subunit''
 
**[[1wu0]] – BsATPS – NMR<BR />
**[[1a91]], [[1c0v]], [[1aty]], [[1c99]] - EcF1-ATPS – NMR<BR />
**[[2wgm]], [[1yce]] – F0-ATPS – ''Ilyobacter tartaricus''<br />
**[[2x2v]], [[4cbk]], [[4cbj]] – F0-ATPS – ''Bacillus pseudofirmus''<br />
**[[4mjn]] - F1-ATPS - wheat<br />
**[[4bem]] - F1F0-ATPS – ''Acetobacterium woodii''<br />
 
*''F1F0 ATPase δ subunit''
 
**[[1abv]] – EcF1-ATPS N terminal – NMR<BR />
 
*''F1F0 ATPase ε subunit''
 
**[[2rq6]], [[2rq7]] - F1-ATPS – ''Thermosynechococcus elongatus''<br />
**[[1abv]], [[1aqt]] – EcF1-ATPS (mutant)<br />
**[[1bsh]], [[1bsn]] – EcF1-ATPS – NMR<BR />
**[[2e5t]], [[2e5u]] – BsF1-ATPS C terminal – NMR<BR />
**[[2e5y]] – BsF1-ATPS
 
*''F1F0 ATPase α, β subunits''
 
**[1sky]] – BsF1-ATPS – Bacillus sp. Ps3<br />
**[[5cdf]] – PdATPase - ''Paracoccus denitrificans''<br />
 
*''F1F0 ATPase α,γ subunits''
 
**[[1c17]] – EcF1-ATPS – NMR<br />
 
*''F1F0 ATPase α, δ subunits''
 
**[[2a7u]] – EcF1-ATPS N termini – NMR<BR />
 
*''F1F0 ATPase β, δ subunits''
 
**[[2cly]] – bF1-ATPS + ATPS coupling factor
 
*''F1F0 ATPase γ, ε subunits''
 
**[[1fs0]] – EcF1-ATPS
 
*''F1F0 ATPase α, β, γ subunits''
 
**[[1ohh]], [[2jiz]], [[4tt3]], [[4tsf]], [[4z1m]] – bF1-ATPS+ IF1 inhibitor – bovine<br />
**[[1e1q]], [[2w6e]], [[2w6f]], [[2w6g]], [[2w6h]], [[2w6i]], [[2w6j]] - bF1-ATPS<br />
**[[1e1r]] - bF1-ATPS+Mg+ADP+AlF4<br />
**[[1w0j]], [[1w0k]] -  bF1-ATPS+BeF3<br />
**[[1nbm]] -  bF1-ATPS+nitrobenzofurazan<br />
**[[1mab]], [[2f43]] - F1-ATPS – rat
 
*''F1F0 ATPase α,β,γ,δ subunits''
 
**[[1qo1]] - yF1-ATPS + protein 9<br />
 
*''F1F0 ATPase α,β,γ,ε subunits''
 
**[[1jnv]] - EcF1-ATPS <br />
**[[3oaa]] – EcF1-ATPS (mutant)<br />
**[[2qe7]], [[4xd7]] – F1-ATPS – ''Bacillus''<br />
**[[5ik2]], [[5hkk]] – F1-ATPS – ''Cakdalkalibacillus thermarum''<br />
 
''F1F0 ATPase α, β, γ, δ, ε subunits''
 
[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]]  - bF1-ATPS<br />
[[2v7q]], [[1e79]], [[2ck3]] -  bF1-ATPS+inhibitor<br />
**[[4yxw]] -  bF1-ATPS+ ANP<br />
[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br />
[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP - yeast<br />
[[3oe7]], [[3oee]], [[3oeh]], [[3ofn]] - yF1-ATPS (mutant)<br />
[[3fks]], [[3zry]], [[2hld]] - yF1-ATPS<br />
**[[3zia]] - yF1-ATPS + inhibitor protein<br />
**[[6f5d]] - F1-ATPS + ribonucleoprotein P18 – Trypanosoma brucei<br />
[[3j0j]] – TtATPS α,β,γ,δ,ε,ζ - Cryo EM<br />
 
''F1F0 ATPase α, β, γ, ε subunits''
 
[[3oaa]] – EcF1-ATPS (mutant)<br />
[[1e79]] - bF1-ATPS<br />
 
''F1F0 ATPase α,β,γ,δ,ε,9,B,D,6,O subunits''
 
[[4b2q]] – yATPase – Cryo EM
 
*''F1F0 ATPase α,β,γ,δ,ε,A,C subunits''
 
**[[5dn6]] – PdATPase + zeta inhibitor protein <br />
 
*''F1F0 ATPase α,β,γ,δ,ε,A,B,C subunits''
 
**[[5t4q]], [[5t4p]], [[5t4o]] – EcATPase – Cryo EM<br />
 
*''F1F0 ATPase α,β,γ,δ,ε,A,B,C,D,F,H,AAP1 subunits''
 
**[[5lqz]], [[5lqy]], [[5lqx]] – ATPase  + ATPase inhibitor protein – Ogataea angusta - Cryo EM<br />
 
*''F1F0 ATPase α,β,γ,δ,ε,B1,C1,D,O subunits''
 
**[[5fil]], [[5fik]], [[5fij]], [[5ari]], [[5arh]], [[5are]], [[5ara]] – bATPase – Cryo EM<br />
 
*''F1F0 ATPase A,B,C,D,E,F,G,J,K subunits''
 
**[[6b2z]] – yATPase – Cryo EM<br />
 
*''F1F0 ATPase α,β,γ,δ,ε,A,D,E,F,G,J,K,H,4,5,8,9 subunits''
 
**[[6b8h]] – yATPase<br />
 
[[1bmf]] - bF1-ATPS<br />
[[3dze]] – bF1-ATPS subunit S<br />
[[1cow]] - bF1-ATPS+aurovertin B<br />
[[4f4s]] – yATPase subunit 9 + oligomycin <br />
 
===V-ATPase===
 
''V-ATPase subunit A''
 
[[3i4l]] - PhATPS subunit A+AMPPNP<br />
[[3mfy]], [[3m4y]], [[3nd8]], [[3nd9]], [[3p20]], [[3qg1]], [[3qia]], [[3qjy]], [[3sdz]], [[3se0]], [[5x09]] - PhATPS subunit A
(mutant)<br />
[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br />
**[[4o1s]] - ATPS subunit A – Thermoplasma volcanium<br />
**[[5i1m]] – yATPase  <br />
**[[5bn5]] – NeATPase + NEQ263 – Nanoarchaeum equitans  <br />
**[[5bn4]] – NeATPase + NEQ263 + ANP  <br />
**[[5bn3]] – NeATPase + NEQ263 + ADP  <br />
 
''V-ATPase subunit B''
 
[[2c61]] - MmATPS subunit B – ''Methanosarcina mazei''<br />
[[2rkw]], [[3b2q]], [[3ssa]], [[3tgw]], [[3tiv]] - MmATPS subunit B (mutant)<br />
[[3dsr]] - MmATPS subunit B+ADP<br />
[[3eiu]] - MmATPS subunit B+ATP<br />
 
''V-ATPase subunit C''
 
[[1u7l]], [[3u2f]], [[3u2y]], [[3u32]], [[3ud0]] - yATPS subunit C<br />
[[3v3c]] - ATPS subunit C - pea<br />
[[1ijp]], [[1l6t]] – EcF1-ATPS subunit C (mutant) – ''Escherichia coli'' - NMR<br />
[[1r5z]], [[1v9m]] - TtATPS subunit C – ''Thermus thermophilus''<br />
[[3lg8]] - MtATPS subunit C C-terminal<br />
[[2w5j]] - sATPS subunit C - spinach<br />
[[2wie]], [[2xqs]], [[2xqt]], [[2xqu]] - ATPS subunit C – Arthrospira platensis<br />
[[3zk1]], [[3zk2]] - ATPS subunit C – Fusobacterium nucleatum<br />
 
''V-ATPase subunit D+F''
 
**[[4rnd]] – yATPase subunit D+F<br />
 
''V-ATPase subunit E''
 
[[2kz9]] – yATPase subunit E<br />
[[2dm9]], [[2dma]], [[4dt0]] - PhATPS subunit E – ''Pyrococcus horikoshii''<br />
[[2kk7]] - MjATPS subunit E – ''Methanocaldococcus jannaschii''<br />
[[3v6i]] – TtATPS subunit E + VAPC<br />
 
''V-ATPase subunit F''
 
[[2qai]] - ATPS subunit F – ''Pyrococcus furiosus''<br />
[[2i4r]] - ATPS subunit F – ''Archaeoglobus fulgidus''<br />
[[2ov6]] - MmATPS subunit F - NMR<br />
[[2d00]] - TtATPS subunit F <br />
[[4ix9]] – yATP subunit F (mutant)<br />
 
''V-ATPase subunit G''
 
[[2k88]] - yATPS subunit G residues 2-58 - NMR<br />
**[[2kwy]] - yATPS subunit G residues 61-101 - NMR<br />
 
''V-ATPase subunit H''
 
[[1ho8]] – yATPS subunit H <br />
 
''V-ATPase subunit K''
 
[[2bl2]], [[2cyd]] - EhATPS subunit K – ''Enterococcus hirae''<br />
 
''V-ATPase subunit I''
 
[[3rrk]] – ATPS subunit I N terminal – ''Meiothermus ruber''
 
*''V-ATPase multi subunits''
 
[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br />
[[3w3a]] - yATPS subunit A,B,D,F<br />
**[[5tj5]] - yATPS subunit A,C,C’,C’’,D,E,F<br />
**[[5voz]], [[5voy]], [[5vox]] - yATPS subunit A,C,C’,C’’,D,E,F,H – Cryo EM<br />
**[[6c6l]] - yATPS subunit A,C,C’,C’’,D,E,F + V0 assembly protein 1<br />
**[[5bw9]] - yATPS subunit A,B,D,E,G,H – Cryo EM<br />
**[[5d80]] - yATPS subunit A,B,D,E,F,G,H<br />
[[3a5c]], [[3a5d]] - TtATPS subunit A,B,D,F<br />
**[[5tsj]] - TtATPS subunit A,B,C,D,E,F,G + antibody - Cryo-EM<br />
**[[5gas]], [[5gar]] - TtATPS subunit A,B,C,D,E,F,G,I - Cryo-EM<br />
**[[5y60]]. [[5y5z]], [[5y5y]], [[5y5x]] - TtATPS subunit A,B,C,D,E,F,I,K - Cryo-EM<br />
[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br />
[[3k5b]] - TtATPS subunit E (mutant)+C<br />
**[[5knd]], [[5knc]], [[5knb]] - EhATPS subunit A,B,D,F<br />
 
===P-ATPase===
 
''Cu+2 transporting ATPase''
 
[[2kmv]], [[2kmx]], [[2arf]], [[2koy]] – hATPase NBD – human – NMR<br />
[[2kij]] - hATPase actuator domain – NMR<br />
[[1yjr]], [[1yjt]], [[1yju]], [[1yjv]] - hATPase  (mutant) 6th soluble domain – NMR<br />
[[1y3j]], [[1y3k]] - hATPase  5th soluble domain – NMR<br />
**[[2ew9]] - hATPase  5th+6th soluble domains – NMR<br />
[[1s6o]], [[1s6u]], [[2lqb]] - hATPase  2nd soluble domain – NMR<br />
[[1q8l]] - hATPase  2nd MBD  – NMR<br />
[[1aw0]], [[2aw0]] - hATPase  4th MBD  – NMR<br />
[[1kvi]], [[1kvj]] - hATPase  1st MBD  – NMR<br />
**[[5t7l]] - hATPase  1st MBD + Cu transport protein<br />
[[3dxs]] - AtATPase RAN1 MBD (mutant) – ''Arabidopsis thaliana''<br />
**[[5lbd]] – AtATPase PAA1 N-domain<br />
**[[5lbk]] – AtATPase PAA2 N-domain<br />
[[3voy]] - AfATPase – Archaeoglobus fulgidus – CryoEM<br />
[[3skx]], [[3sky]] - AfATPase NBD<br />
[[2k1r]] - hATPase MBD+ ATOX1 – NMR<br />
[[2rop]], [[2g9o]], [[2ga7]] - hATPase MBD – NMR<br />
[[2rml]] - BsATPase N-terminal – ''Bacillus subtilis'' – NMR<br />
[[2gcf]] - sATPase N-terminal - Synechocystis – NMR<br />
**[[4a4j]] - sATPase N-terminal <br />
[[4a48]] - sATPase<br />
[[2iye]] - SsATPase catalytic domain – ''Sulfolobus solfataricus''<br />
[[2yj3]] - SsATPase catalytic domain (mutant)<br />
[[2yj4]], [[2yj5]], [[2yj6]] - SsATPase catalytic domain (mutant) + nucleotide<br />
[[1fvq]], [[1fvs]] - hATPase – NMR<br />
[[3cjk]] – hATPase + Cu transporting protein ATX1<br />
[[3rfu]], [[4bbj]], [[4bev]], [[4byg]] – LpATPase – ''Legionella pneumophila''<br />
[[4f2f]] - ATPase metal-binding domain – ''Streptococcus pneumonia''<br />
[[3j08]], [[3j09]] - AfATPase<br />
[[3a1c]] – AfATPase + AMPPCP<br />
[[3a1d]] - AfATPase + ADP-Mg<br / >
[[3a1e]] - AfATPase (mutant) + AMPPCP<br />
 
''Na/K transporting ATPase''
 
[[3a3y]] - SaATPase+K+ouabain – ''Squalus acanthias''<br />
[[3kdp]], [[3b8e]] – pATPase  – pig <br />
[[3n23]] – pATPase + ouabain<br />
**[[3wgv]], [[3wgu]] – pATPase + oligomycin<br />
[[3b8e]] - pATPase a+BeF3 <br />
[[2hc8]] –AfATPase CopA A domain<br />
[[2b8e]] - AfATPase CopA NBD<br />
[[2xze]] - SaATPase<br />
**[[5aw9]], [[5aw8]], [[5aw7]], [[5aw6]], [[5aw5]], [[5aw4]], [[5aw3]], [[5aw2]], [[5aw1]], [[5aw0]], [[5avz]], [[5avy]], [[5avx]], [[5avw]], [[5avv]], [[5avu]], [[5avt]], [[5avs]], [[5avr]], [[5avq]] – SaATPase + phospholemman-like protein<br />
**[[4xe5]] - bATPase <br />
[[1mo8]], [[1mo7]] - rATPase α-1 – rat<br />
[[1q3i]] - pATPase NBD<br />
[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />
[[2zxe]] - ATPase subunits α,β + phospholemman-like protein – spiny dogfish
 
''Ca+2 transporting ATPase''
 
[[3fgo]] - rATPase+CPA+AMPPCP – rabbit<br />
[[3b9r]], [[1xp5]] - rATPase+AlF4<br />
[[1wpg]] - rATPase+MgF4<br />
[[3w5b]] - rATPase+Mg<br />
**[[4h1w]], [[3w5a]] - rATPase+ sarcolipin<br />
[[3w5c]], [[3w5d]], [[1iwo]] - rATPase<br />
**[[4bew]] - rATPase+ phosphate analog<br />
[[2zbe]], [[3b9b]] – rATPase+BeF3<br />
[[2zbf]] - rATPase+BeF3+TG<br />
[[2zbg]] - rATPase+AlF4+TG<br />
[[2zbd]], [[3ar8]] - rATPase+AlF4+nucleotide+Ca<br />
[[3ar9]] - rATPase+BeF3+nucleotide<br />
[[2dqs]], [[3ar2]], [[1vfp]], [[4xou]] - rATPase+AMPPCP<br />
**[[5a3r]]  - rATPase + BeF3 + AMPPCP<br />
[[2c88]], [[2c8k]], [[3ar4]], [[3ar3]], [[3ar5]], [[3ar7]] - rATPase+nucleotide+TG<br />
[[2ear]], [[2c8l]] - rATPase+TG<br />
[[2agv]] - rATPase+TG+BHQ<br />
[[4ycl]] - rATPase+CPA<br />
[[2eat]] - rATPase+CPA+GT<br />
[[3ar6]] - rATPase+TNP-ADP+GT<br />
[[2eau]] - rATPase+CPA+curcumin<br />
[[3ba6]] - rATPase phosphoenzyme intermediate<br />
[[3fpb]] - rATPase+ATP+cyclopiazonic acid<br />
[[3fps]], [[2oa0]] - rATPase+ADP+cyclopiazonic acid<br />
[[2o9j]] - rATPase+MgF4+cyclopiazonic acid<br />
[[1kju]], [[3n5k]] - rATPase E2 state<br />
[[2c9m]] - rATPase Ca2E1 state<br />
[[1t5s]], [[3n8g]] - rATPase Ca2E1 state+AMPPCP<br />
**[[4nab]] - rATPase Ca2E1 state (mutant) +AMPPCP<br />
[[1t5t]] - rATPase Ca2E1 state+ADP+AlF4<br />
[[1su4]] - rATPase +2Ca2<br />
[[2by4]], [[2yfy]], [[3nal]], [[3nam]], [[3nan]], [[4uu1]], [[4uu0]], [[4j2t]], [[5a3s]] - rATPase HNE2 state+thapsigargin derivative<br />
**[[5a3q]] - rATPase + thapsigargin derivative + AMPPCP<br />
**[[4ycn]], [[4ycm]]  - rATPase + macrolide<br />
**[[4y3u]]  - rATPase + phospholamban<br />
 
''Zn+2 transporting ATPase''
 
[[2ofg]], [[2ofh]] - sATPase N-terminal – NMR
**[[4umw]], [[4umv]] - ATPase +Mg – Shigella sonni<br />
 
''K+ transporting ATPase''
 
[[2a00]], [[2a29]] - EcATPase NBD of KdpB+AMPPNP– ''Escherichia coli'' – NMR<br />
[[1svj]], [[1u7q]] - EcATPase NBD of KdpB – NMR<br />
[[2ynr]], [[4ux2]], [[4ux1]], [[5y0b]] – pATPase – Cryo EM
 
''As+ transporting ATPase''
 
[[1ii0]], [[1f48]] - EcATPase<br />
[[1ihu]] – EcATPase+Mg+ADP+AlF3<br />
[[1ii9]] - EcATPase<br />
[[3h84]], [[3idq]],  [[3a36]], [[3a37]] - yATPase GET3 <br />
**[[4pwx]], [[5bwk]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein <br />
**[[5bw8]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein + protein<br />
**[[4xwo]] - yATPase GET3 + antibody + Sec22<br />
**[[4xvu]] - yATPase GET3 + antibody + NYV1<br />
**[[4xtr]] - yATPase GET3 + antibody + pep12p<br />
[[3sja]], [[3sjb]], [[3sjc]], [[3sjd]], [[3zs8]], [[3zs9]], [[3b2e]], [[3vlc]] - yATPase GET3 + GET1 cystolic domain<br />
[[3ibg]] - ATPase GET3 – ''Aspergillus fumigatus''
 
''H+ transporting ATPase''
 
[[5ksd]]  - AtATPase C terminal truncated<br />
[[1mhs]] - ATPase – ''Neurospora crassa''<br />
 
''Na+ transporting ATPase''
 
[[2db4]], [[3aou]] - EhATPase subunit K – ''Enterococcus hirae''<br />
[[3aon]] - EhATPase subunits D,G<br />
[[3vr2]] - EhATPase subunits A,B<br />
[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />
[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />
[[3vr6]] - EhATPase subunits A,B,D,G + AMPPNP<br />
[[1yce]] - ATPase rotor ring – ''Ilyobacter tartaricus''
 
''H/K transporting ATPase''
 
[[1iwc]], [[1iwf]] - pATPase NBD <br />
[[3ixz]] - pATPase a+AlF4<br />
[[2xzb]] – pATPase subunits α, β<br />
 
''Mg+2 transporting ATPase''
 
[[3gwi]] – EcATPase P-1 NBD
 
''Arg/ornithine transporting ATPase''
 
[[3md0]] – MtATPase+GDP – ''Mycobacterium tuberculosis''<br />
[[1kmh]] - ATPase alpha subunit+tentoxin – spinach<br />
[[1h8e]] – cATPase+ADP+AlF4+ADP+SO4 - cow<br />
[[1h8h]] - cATPase+ AMPPNP<br />
[[1efr]] - cATPase+efrapeptin<br />
[[3fks]] – yATPase <br />
[[3ea0]] – ATPase ParA, fragment – ''Chlorobium tepidum''<br />
[[2qen]] – ATPase (mutant) Walker-type – ''Pyrococcus abyssi''<br />
[[3cf0]], [[3cf1]], [[3cf3]] – mATPase  NBD+ADP – mouse<br />
[[3cf2]] - mATPase NBD+ADP+AMP-PNP<br />
[[2r31]], [[2p4x]] – PdATPase ATP12 <br />
[[2zd2]] – PdATPase (mutant) ATP12<br />
[[1d8s]] – EcATPase F1<br />
[[1vdz]] – PhATPase subunit A – ''Pyrococcus horikoshii''<br />
 
*''Monosaccharide transporting ATPase''
 
**[[5dte]] – AsATPase – Actinobacillus succinogenes<br />
**[[4zjp]] – AsATPase + ribopyranose<br />
 
===RNA-dependent ATPase===
 
[[3eaq]], [[3i31]], [[3i32]] – TtATPase fragment<br />
**[[4kbg]], [[4kbf]] - TtATPase helicase core domain<br />
**[[5mao]] - TtATPase RRM domain <br />
**[[4i69]], [[4i68]] - TtATPase RRM domain (mutant)<br />
**[[4i67]] - TtATPase RRM domain + RNA<br />
[[3mwj]] – TtATPase N-terminal (mutant)<br />
[[3mwk]], [[3nbf]] – TtATPase N-terminal + 8-oxo-AMP<br />
[[3mwl]] - TtATPase N-terminal (mutant) + 8-oxoadenine<br />
[[3nej]] - TtATPase reca-like domain (mutant)
 
* DNA-dependent ATPase
 
**[[5tnu]] - ATPase – ''Sulfolobus tokodaii''<br />
 
*ATP-dependent ATPase
 
**[[5txv]] – EcATPase subunit HSLU<br />
**[[5ji3]], [[5ji2]] – EcATPase subunits HSLU+HSLV<br />
 
===Proteasome-associated ATPase===
 
[[3fp9]], [[3m9b]], [[3m9h]] – MtATPase intern domain<br />
[[3m91]], [[3m9d]] - MtATPase coiled coil domain + protein PUP<br />
**[[5kzf]] – MtATPase residues 98-609<br />
**[[5kwa]] – MtATPase residues 22-529<br />
[[3kw6]] – hATPase 5<br />
**[[6epf]], [[6epe]], [[6epd]], [[6epc]] – rATPase 6 + proteasome – Cryo EM<br />
 
===Transitional endoplasmic reticulum ATPase===
 
**[[5c19]] – hTer-ATPase (mutant) <br />
[[3hu1]], [[3hu2]], [[3hu3]], [[5ftn]], [[5ftm]], [[5ftl]], [[5ftk]], [[5ftj]] – hTer-ATPase + ATPGS<br />
**[[4ko8]], [[4kln]], [[5dyg]], [[5c18]] – hTer-ATPase (mutant) + ATPGS<br />
**[[5dyi]] – hTer-ATPase + ADP<br />
**[[4kod]] – hTer-ATPase (mutant) + ADP<br />
[[3qc8]], [[3qq8]], [[3qwz]] - hTer-ATPase N terminal + FAS-associated factor 1<br />
[[3qq7]] - hTer-ATPase N terminal<br />
[[3tiw]] - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide
**[[5c1b]] - hTer-ATPase N terminal + UFD1--SHP peptide<br />
**[[5glf]] - hTer-ATPase N terminal + derlin-1 peptide<br />
**[[5epp]] - hTer-ATPase N terminal + rhomboid-related protein 4 peptide<br />
**[[4kdl]], [[4kdi]] - hTer-ATPase N terminal + ubiquitin thioesterase OTU1<br />
**[[5b6c]] - hTer-ATPase N terminal + ubiquitin fusion degradation protein<br />
**[[5ifw]], [[5ifs]] - hTer-ATPase + tether containing UBX domain<br />
**[[5x4l]] - hTer-ATPase + UBX domain-containing protein<br />
**[[5kiy]], [[5kiw]] - hTer-ATPase (mutant) + Selenoprotein S<br />
**[[1s3s]] - mTer-ATPase ND1 domain + P47 C terminal<br />
**[[4rv0]] - Ter-ATPase N terminal + nuclear protein localization protein – Drosophila melanogaster<br />
 
* Sarcoplasmic/endoplasmic reticulum ATPase
 
**[[5xa7]], [[5xa8]], [[5xa9]], [[5xaa]], [[5xab]] – rATPase <br />
**[[5ncq]] – rATPase + ATP derivative + carbazole derivative<br />
**[[5mpm]] – pATPase <br />
 
===LAO/AO transport system ATPase===
 
[[3nxs]] – ATPase – ''Mycobacterium smegmatis''
 
===DNA double-strand repair ATPase (Rad50)===
 
[[3aux]] – MjRad50 – ''Methanocaldococcus jannaschii''<br />
[[3auy]] - MjRad50 + ADP<br />
[[3av0]] - MjRad50 + ATP<br />
**[[5f3w]] - MjRad50 + MRE11 + ATPGS<br />
**[[5dny]] - MjRad50 + MRE11 + DNA<br />
[[3qg5]] – Rad50 NBD + MRE11 – ''Thermotoga maritima''<br />
[[3qkr]], [[3qks]], [[3qf7]] - PfRad50 NBD + MRE11 – ''Pyrococcus furiosus''<br />
**[[4nck]], [[4nci]], [[4nch]] - PfRad50 NBD (mutant)<br />
**[[4ncj]] - PfRad50 NBD (mutant) + BeF3 + ADP<br />
[[3qkt]] - PfRad50 NBD + AMPPNP<br />
[[3qku]] - PfRad50 NBD + AMPPNP + MRE11
 
===MipZ ATPase===
 
[[2xit]], [[2xj4]] – CcMipZ – ''Caulobacter crescentus''<br />
[[2xj9]] – CcMipZ (mutant)
 
* ATPase Rava
 
**[[5fl2]], [[4upf]] – EcATPase LARA domain + lysine decarboxylase<br />
**[[4upb]] – EcATPase + lysine decarboxylase – Cryo EM<br />
[[3nbx]] – EcATPase Rava + ADP
 
'''FlaI ATPase'''
 
[[4ihq]], [[4ii7]] – ATPase (mutant) – ''Sulfolobus acidocaldarius''<br />
 
*'''The RuvBL1/RuvBL2 complex (ATPase)'''
 
**  [[Journal:JSB:1|RuvBL1/RuvBL2 complex (ATPase)]] - Structural and functional insights into a dodecameric molecular machine<ref >PMID: 21933716</ref><br />
 
}}


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The [http://cbm.msoe.edu MSOE Center for BioMolecular Modeling] uses 3D printing technology to create physical models of protein and molecular structures, making the invisible molecular world more tangible and comprehensible. To view more protein structure models, visit our [http://cbm.msoe.edu/educationalmedia/modelgallery/ Model Gallery].


== 3D Structures of ATPase ==
[[ATPase 3D structures]]


==References==
==References==

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Jaime Prilusky, Michal Harel, Wayne Decatur, Mark Hoelzer, Karsten Theis