2l5e: Difference between revisions
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Complex between BD1 of Brd3 and GATA-1 C-tail== | ==Complex between BD1 of Brd3 and GATA-1 C-tail== | ||
<StructureSection load='2l5e' size='340' side='right'caption='[[2l5e | <StructureSection load='2l5e' size='340' side='right'caption='[[2l5e]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2l5e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[2l5e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L5E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L5E FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l5e OCA], [https://pdbe.org/2l5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l5e RCSB], [https://www.ebi.ac.uk/pdbsum/2l5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l5e ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l5e OCA], [https://pdbe.org/2l5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l5e RCSB], [https://www.ebi.ac.uk/pdbsum/2l5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l5e ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/BRD3_MOUSE BRD3_MOUSE] Chromatin reader that recognizes and binds acetylated histones, thereby controlling gene expression and remodeling chromatin structures (PubMed:21536911). Recruits transcription factors and coactivators to target gene sites, and activates RNA polymerase II machinery for transcriptional elongation (By similarity). In vitro, binds acetylated lysine residues on the N-terminus of histone H2A, H2B, H3 and H4 (PubMed:21536911). Involved in endoderm differentiation via its association with long non-coding RNA (lncRNA) DIGIT: BRD3 undergoes liquid-liquid phase separation upon binding to lncRNA DIGIT, promoting binding to histone H3 acetylated at 'Lys-18' (H3K18ac) to induce endoderm gene expression (PubMed:32895492). Also binds non-histones acetylated proteins, such as GATA1 and GATA2: regulates transcription by promoting the binding of the transcription factor GATA1 to its targets (PubMed:21536911, PubMed:21555453).[UniProtKB:Q15059]<ref>PMID:21536911</ref> <ref>PMID:21555453</ref> <ref>PMID:32895492</ref> | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 25: | Line 27: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Mus musculus]] | ||
[[Category: Blobel | [[Category: Blobel GA]] | ||
[[Category: Gamsjaeger | [[Category: Gamsjaeger R]] | ||
[[Category: Lamonica | [[Category: Lamonica JM]] | ||
[[Category: Mackay | [[Category: Mackay JP]] | ||
[[Category: Webb | [[Category: Webb SR]] | ||