3p2q: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:3p2q.jpg|left|200px]]
-<!--
+==Crystal structure of the fluoroacetyl-CoA-specific thioesterase, FlK==
-The line below this paragraph, containing "STRUCTURE_3p2q", creates the "Structure Box" on the page.
+<StructureSection load='3p2q' size='340' side='right'caption='[[3p2q]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3p2q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_cattleya Streptomyces cattleya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P2Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P2Q FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p2q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p2q OCA], [https://pdbe.org/3p2q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p2q RCSB], [https://www.ebi.ac.uk/pdbsum/3p2q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p2q ProSAT]</span></td></tr>
-{{STRUCTURE_3p2q|  PDB=3p2q  |  SCENE=  }}
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+We have initiated a broad-based program aimed at understanding the molecular basis of fluorine specificity in enzymatic systems, and in this context, we report crystallographic and biochemical studies on a fluoroacetyl-coenzyme A (CoA) specific thioesterase (FlK) from Streptomyces cattleya. Our data establish that FlK is competent to protect its host from fluoroacetate toxicity in vivo and demonstrate a 10(6)-fold discrimination between fluoroacetyl-CoA (k(cat)/K(M) = 5 x 10(7) M(-1) s(-1)) and acetyl-CoA (k(cat)/K(M) = 30 M(-1) s(-1)) based on a single fluorine substitution that originates from differences in both substrate reactivity and binding. We show that Thr 42, Glu 50, and His 76 are key catalytic residues and identify several factors that influence substrate selectivity. We propose that FlK minimizes interaction with the thioester carbonyl, leading to selection against acetyl-CoA binding that can be recovered in part by new C horizontal lineO interactions in the T42S and T42C mutants. We hypothesize that the loss of these interactions is compensated by the entropic driving force for fluorinated substrate binding in a hydrophobic binding pocket created by a lid structure, containing Val 23, Leu 26, Phe 33, and Phe 36, that is not found in other structurally characterized members of this superfamily. We further suggest that water plays a critical role in fluorine specificity based on biochemical and structural studies focused on the unique Phe 36 "gate" residue, which functions to exclude water from the active site. Taken together, the findings from these studies offer molecular insights into organofluorine recognition and design of fluorine-specific enzymes.
-===Crystal structure of the fluoroacetyl-CoA-specific thioesterase, FlK===
+Structural and Biochemical Studies of a Fluoroacetyl-CoA-Specific Thioesterase Reveal a Molecular Basis for Fluorine Selectivity.,Weeks AM, Coyle SM, Jinek M, Doudna JA, Chang MC Biochemistry. 2010 Oct 11. PMID:20836570<ref>PMID:20836570</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3p2q" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_20836570}}, adds the Publication Abstract to the page
+*[[Thioesterase 3D structures|Thioesterase 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 20836570 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_20836570}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-P2Q is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Streptomyces_cattleya Streptomyces cattleya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P2Q OCA].
-==Reference==
-<ref group="xtra">PMID:20836570</ref><references group="xtra"/>
 [[Category: Streptomyces cattleya]]
-[[Category: Chang, M C.Y.]]
+[[Category: Chang MCY]]
-[[Category: Coyle, S M.]]
+[[Category: Coyle SM]]
-[[Category: Doudna, J A.]]
+[[Category: Doudna JA]]
-[[Category: Jinek, M.]]
+[[Category: Jinek M]]
-[[Category: Weeks, A M.]]
+[[Category: Weeks AM]]
-[[Category: Hot dog-fold]]
-[[Category: Hydrolase]]
-[[Category: Thioesterase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 20 06:41:50 2010''