3out: Difference between revisions

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 ==Crystal structure of glutamate racemase from Francisella tularensis subsp. tularensis SCHU S4 in complex with D-glutamate.==
-<StructureSection load='3out' size='340' side='right' caption='[[3out]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+<StructureSection load='3out' size='340' side='right'caption='[[3out]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3out]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Francisella_tularensis_subsp._tularensis Francisella tularensis subsp. tularensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OUT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3out]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Francisella_tularensis_subsp._tularensis Francisella tularensis subsp. tularensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OUT FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DGL:D-GLUTAMIC+ACID'>DGL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGL:D-GLUTAMIC+ACID'>DGL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FTT_1197c, murI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119856 Francisella tularensis subsp. tularensis])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3out FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3out OCA], [https://pdbe.org/3out PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3out RCSB], [https://www.ebi.ac.uk/pdbsum/3out PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3out ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutamate_racemase Glutamate racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.3 5.1.1.3] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3out FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3out OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3out RCSB], [http://www.ebi.ac.uk/pdbsum/3out PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/Q5NFN6_FRATT Q5NFN6_FRATT]] Provides the (R)-glutamate required for cell wall biosynthesis (By similarity).[HAMAP-Rule:MF_00258][SAAS:SAAS018187_004_003686]
+[https://www.uniprot.org/uniprot/Q5NFN6_FRATT Q5NFN6_FRATT] Provides the (R)-glutamate required for cell wall biosynthesis (By similarity).[HAMAP-Rule:MF_00258][SAAS:SAAS018187_004_003686]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ou/3out_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ou/3out_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3out ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[Glutamate racemase|Glutamate racemase]]
+*[[Glutamate racemase 3D structures|Glutamate racemase 3D structures]]
 __TOC__
 </StructureSection>
 [[Category: Francisella tularensis subsp. tularensis]]
-[[Category: Glutamate racemase]]
+[[Category: Large Structures]]
-[[Category: Anderson, F W]]
+[[Category: Anderson FW]]
-[[Category: Structural genomic]]
+[[Category: Edwards A]]
-[[Category: Edwards, A]]
+[[Category: Filippova EV]]
-[[Category: Filippova, E V]]
+[[Category: Kudriska M]]
-[[Category: Kudriska, M]]
+[[Category: Onopriyenko O]]
-[[Category: Onopriyenko, O]]
+[[Category: Savchenko A]]
-[[Category: Savchenko, A]]
+[[Category: Wawrzak Z]]
-[[Category: Wawrzak, Z]]
-[[Category: Cell envelope]]
-[[Category: Csgid]]
-[[Category: Francisella tularensis subsp. tularensis schu s4]]
-[[Category: Isomerase]]
-[[Category: Muri]]