3oop: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==The structure of a protein with unknown function from Listeria innocua Clip11262==
-<StructureSection load='3oop' size='340' side='right' caption='[[3oop]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
+<StructureSection load='3oop' size='340' side='right'caption='[[3oop]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3oop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lisin Lisin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OOP FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3oop]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_innocua_Clip11262 Listeria innocua Clip11262]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OOP FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lin2960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272626 LISIN])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oop OCA], [http://pdbe.org/3oop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3oop RCSB], [http://www.ebi.ac.uk/pdbsum/3oop PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3oop ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oop OCA], [https://pdbe.org/3oop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oop RCSB], [https://www.ebi.ac.uk/pdbsum/3oop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oop ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q926T1_LISIN Q926T1_LISIN]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3oop_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3oop_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 20: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Lisin]]
+[[Category: Large Structures]]
-[[Category: Fan, Y]]
+[[Category: Listeria innocua Clip11262]]
-[[Category: Gu, M]]
+[[Category: Fan Y]]
-[[Category: Joachimiak, A]]
+[[Category: Gu M]]
-[[Category: Li, H]]
+[[Category: Joachimiak A]]
-[[Category: Structural genomic]]
+[[Category: Li H]]
-[[Category: Zhou, Y]]
+[[Category: Zhou Y]]
-[[Category: Mcsg]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]