3ojc: Difference between revisions

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 ==Crystal structure of a putative Asp/Glu Racemase from Yersinia pestis==
-<StructureSection load='3ojc' size='340' side='right' caption='[[3ojc]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+<StructureSection load='3ojc' size='340' side='right'caption='[[3ojc]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3ojc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OJC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OJC FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3ojc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OJC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OJC FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEZ:HEXANE-1,6-DIOL'>HEZ</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEZ:HEXANE-1,6-DIOL'>HEZ</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">racX, YPO2758, YP_2405 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 Yersinia pestis])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ojc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ojc OCA], [https://pdbe.org/3ojc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ojc RCSB], [https://www.ebi.ac.uk/pdbsum/3ojc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ojc ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ojc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ojc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ojc RCSB], [http://www.ebi.ac.uk/pdbsum/3ojc PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A0A6B3V8A6_YERPE A0A6B3V8A6_YERPE]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oj/3ojc_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oj/3ojc_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ojc ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Yersinia pestis]]
+[[Category: Large Structures]]
-[[Category: Anderson, S M.]]
+[[Category: Yersinia pestis CO92]]
-[[Category: Anderson, W F.]]
+[[Category: Anderson SM]]
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+[[Category: Anderson WF]]
-[[Category: Kudritska, M.]]
+[[Category: Kudritska M]]
-[[Category: Kwon, K.]]
+[[Category: Kwon K]]
-[[Category: Savchenko, A.]]
+[[Category: Savchenko A]]
-[[Category: Wawrzak, Z.]]
+[[Category: Wawrzak Z]]
-[[Category: Alpha beta]]
-[[Category: Asp/glu/hydantoin racemase family]]
-[[Category: Center for structural genomics of infectious disease]]
-[[Category: Csgid]]
-[[Category: Isomerase]]
-[[Category: Rossmann fold]]
-[[Category: Structural genomic]]