Interactive 3D Complements in Proteopedia: Difference between revisions
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Articles in Proteopedia can be designed to complement publications in scientific journals. A link, within the publication, to an ''interactive 3D complement'' (I3DC) in Proteopedia can enable readers to rotate molecular scenes having the same initial orientation, color schemes, and labeling as figures in the publication. Links to the interactive 3D complement in Proteopedia can be placed in the text of the publication, and/or in the .doc file included on the journal website as [[#I3DC vs. Supplementary Materials|supplementary materials]]. The I3DC article can be developed in advance of publication, yet hidden from viewing by visitors to Proteopedia until publication occurs (see [[Proteopedia:Workbench]]). Authors of the associated publications are able and encouraged to review the I3DC page before publication, and to interact with the [[Proteopedia:Team#Proteopedia_I3DC_Board|Proteopedia editor]] at any time. I3DC are [[#Protection From Editing|protected]] from editing by anyone. | Articles in Proteopedia can be designed to complement publications in scientific journals. A link, within the publication, to an ''interactive 3D complement'' (I3DC) in Proteopedia can enable readers to rotate molecular scenes having the same initial orientation, color schemes, and labeling as figures in the publication. Links to the interactive 3D complement in Proteopedia can be placed in the text of the publication, and/or in the .doc file included on the journal website as [[#I3DC vs. Supplementary Materials|supplementary materials]]. The I3DC article can be developed in advance of publication, yet hidden from viewing by visitors to Proteopedia until publication occurs (see [[Proteopedia:Workbench]]). Authors of the associated publications are able and encouraged to review the I3DC page before publication, and to interact with the [[Proteopedia:Team#Proteopedia_I3DC_Board|Proteopedia editor]] at any time. I3DC are [[#Protection From Editing|protected]] from editing by anyone. | ||
Proteopedia is working with Journals to develop, in close collaboration with authors, interactive 3D complement articles in Proteopedia, thus rendering the structural data more comprehensible to a wider audience. In addition, Proteopedia welcomes author-initiated development of interactive 3D complement articles for individual publications in any journal. List of [[Proteopedia:I3DC|I3DC pages]] available for open access. | Proteopedia is working with Journals to develop, in close collaboration with authors, interactive 3D complement articles in Proteopedia, thus rendering the structural data more comprehensible to a wider audience. In addition, Proteopedia welcomes author-initiated development of interactive 3D complement articles for individual publications in any journal. '''List of [[Proteopedia:I3DC|I3DC pages]]''' available for open access. | ||
For more details, please | For more details, please [[Special:Contact|Contact]] us. | ||
==Journals Adopting I3DC== | ==Journals Adopting I3DC== | ||
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==Author-Initiated I3DC== | ==Author-Initiated I3DC== | ||
Proteopedia encourages authors of any scientific publication to develop an interactive 3D complement in Proteopedia. Members of the Proteopedia team stand ready to assist: | Proteopedia encourages authors of any scientific publication to develop an interactive 3D complement in Proteopedia. Members of the Proteopedia team stand ready to assist: [[Special:Contact|Contact]]. Here are some examples of author-initiated I3DC. Years are dates of journal publication. | ||
===2015-Present=== | ===2015-Present=== | ||
* 2021: Structure of Geobacter pili reveals secretory rather than nanowire behavior. Gu, Srikanth, ''et al., Nature'', in press. See [[Malvankar/3]]. | |||
** See also [[Malvankar]], a list of I3DC for publications by this author. | |||
* 2019: Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers. Wang, Gu ''et al., Cell'' <ref>PMID:30951668</ref>, see [[Malvankar/2]]. | |||
* 2017: An intrinsically disordered linker controlling the formation and the stability of the bacterial flagellar hook. Barker ''et al.'', ''BMC Biology'' <ref>PMID:29078764</ref>, see [[Samatey/5]]. | * 2017: An intrinsically disordered linker controlling the formation and the stability of the bacterial flagellar hook. Barker ''et al.'', ''BMC Biology'' <ref>PMID:29078764</ref>, see [[Samatey/5]]. | ||
** See also [[Samatey]], a list of I3DC for publications by this author. | |||
* 2016: Complete structure of the bacterial flagellar hook reveals extensive set of stabilizing interactions. Matsunami ''et al.'', ''Nature Communications''<ref>PMID:27811912</ref>, see [[Samatey/4]]. | * 2016: Complete structure of the bacterial flagellar hook reveals extensive set of stabilizing interactions. Matsunami ''et al.'', ''Nature Communications''<ref>PMID:27811912</ref>, see [[Samatey/4]]. | ||
* 2016: Structural insights into bacterial flagellar hook similarities and specifities. Yoon ''et al.'', ''Scientific Reports''<ref>PMID: 27759043</ref>, see [[Samatey/3]]. | * 2016: Structural insights into bacterial flagellar hook similarities and specifities. Yoon ''et al.'', ''Scientific Reports''<ref>PMID: 27759043</ref>, see [[Samatey/3]]. | ||