3o26: Difference between revisions

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-[[Image:3o26.png|left|200px]]
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+==The structure of salutaridine reductase from Papaver somniferum.==
-The line below this paragraph, containing "STRUCTURE_3o26", creates the "Structure Box" on the page.
+<StructureSection load='3o26' size='340' side='right'caption='[[3o26]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3o26]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Papaver_somniferum Papaver somniferum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O26 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O26 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
-{{STRUCTURE_3o26|  PDB=3o26  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o26 OCA], [https://pdbe.org/3o26 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o26 RCSB], [https://www.ebi.ac.uk/pdbsum/3o26 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o26 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SALR_PAPSO SALR_PAPSO] Short-chain dehydrogenases/reductases involved in biosynthesis of morphinan-type benzylisoquinoline and opiate alkaloids natural products (PubMed:22098111). Catalyzes specifically the stereospecific conversion of salutaridine to salutaridinol (PubMed:22098111).<ref>PMID:16968522</ref> <ref>PMID:19648114</ref> <ref>PMID:22098111</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The opium poppy (Papaver somniferum L.) is one of the oldest known medicinal plants. In the biosynthetic pathway for morphine and codeine, salutaridine is reduced to salutaridinol by salutaridine reductase (SalR; EC 1.1.1.248) using NADPH as coenzyme. Here we report the atomic structure of SalR to a resolution of ~1.9A in the presence of NADPH. The core structure is highly homologous to the other members of the short chain dehydrogenase/reductase (SDR) family. The major difference is that the nicotinamide moiety and the substrate-binding pocket are covered by a loop (residues 265-279) and on top of that lies a large 'flap' like domain (residues 105-140). This configuration appears to be a combination of the two common structural themes found in other members of the SDR family. Previous modeling studies suggested that substrate inhibition is due mutually exclusive productive and nonproductive modes of substrate binding in the active site. This model was tested via site-directed mutagenesis and a number of these mutations abrogated substrate inhibition. However, the atomic structure of SalR shows that these mutated residues are, instead, distributed over a wide area of the enzyme and many are not in the active site. To explain how residues distal to the active site might affect catalysis, a model is presented whereby SalR may undergo significant conformational changes during catalytic turnover.
-===The structure of salutaridine reductase from Papaver somniferum.===
+The atomic structure of salutaridine reductase from the opium poppy Papaver somniferum.,Higashi Y, Kutchan TM, Smith TJ J Biol Chem. 2010 Dec 17. PMID:21169353<ref>PMID:21169353</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_21169353}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 3o26" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 21169353 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_21169353}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-[[3o26]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Papaver_somniferum Papaver somniferum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O26 OCA].
-==Reference==
-<ref group="xtra">PMID:21169353</ref><references group="xtra"/>
 [[Category: Papaver somniferum]]
-[[Category: Higashi, Y.]]
+[[Category: Higashi Y]]
-[[Category: Kutchen, T M.]]
+[[Category: Kutchen TM]]
-[[Category: Smith, T J.]]
+[[Category: Smith TJ]]