3naf: Difference between revisions

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-{{Seed}}
-[[Image:3naf.png|left|200px]]
-<!--
+==Structure of the Intracellular Gating Ring from the Human High-conductance Ca2+ gated K+ Channel (BK Channel)==
-The line below this paragraph, containing "STRUCTURE_3naf", creates the "Structure Box" on the page.
+<StructureSection load='3naf' size='340' side='right'caption='[[3naf]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3naf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NAF FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3naf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3naf OCA], [https://pdbe.org/3naf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3naf RCSB], [https://www.ebi.ac.uk/pdbsum/3naf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3naf ProSAT]</span></td></tr>
-{{STRUCTURE_3naf|  PDB=3naf  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/KCMA1_HUMAN KCMA1_HUMAN]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/na/3naf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3naf ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Large-conductance Ca(2+)-gated K(+) (BK) channels are essential for many biological processes such as smooth muscle contraction and neurotransmitter release. This group of channels can be activated synergistically by both voltage and intracellular Ca(2+), with the large carboxy-terminal intracellular portion being responsible for Ca(2+) sensing. Here we present the crystal structure of the entire cytoplasmic region of the human BK channel in a Ca(2+)-free state. The structure reveals four intracellular subunits, each comprising two tandem RCK domains, assembled into a gating ring similar to that seen in the MthK channel and probably representing its physiological assembly. Three Ca(2+) binding sites including the Ca(2+) bowl are mapped onto the structure based on mutagenesis data. The Ca(2+) bowl, located within the second RCK domain, forms an EF-hand-like motif and is strategically positioned close to the assembly interface between two subunits. The other two Ca(2+) (or Mg(2+)) binding sites, Asp 367 and Glu 374/Glu 399, are located on the first RCK domain. The Asp 367 site has high Ca(2+) sensitivity and is positioned in the groove between the amino- and carboxy-terminal subdomains of RCK1, whereas the low-affinity Mg(2+)-binding Glu 374/Glu 399 site is positioned on the upper plateau of the gating ring and close to the membrane. Our structure also contains the linker connecting the transmembrane and intracellular domains, allowing us to dock a voltage-gated K(+) channel pore of known structure onto the gating ring with reasonable accuracy and generate a structural model for the full BK channel.
-===Structure of the Intracellular Gating Ring from the Human High-conductance Ca2+ gated K+ Channel (BK Channel)===
+Structure of the gating ring from the human large-conductance Ca(2+)-gated K(+) channel.,Wu Y, Yang Y, Ye S, Jiang Y Nature. 2010 Jul 15;466(7304):393-7. Epub 2010 Jun 23. PMID:20574420<ref>PMID:20574420</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3naf" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_20574420}}, adds the Publication Abstract to the page
+*[[Potassium channel 3D structures|Potassium channel 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 20574420 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_20574420}}
+__TOC__
+</StructureSection>
-==About this Structure==
-NAF is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NAF OCA].
-==Reference==
-<ref group="xtra">PMID:20574420</ref><references group="xtra"/>
 [[Category: Homo sapiens]]
-[[Category: Jiang, Y.]]
+[[Category: Large Structures]]
-[[Category: Wu, Y.]]
+[[Category: Jiang Y]]
-[[Category: Yang, Y.]]
+[[Category: Wu Y]]
-[[Category: Ye, S.]]
+[[Category: Yang Y]]
-[[Category: Gating ring]]
+[[Category: Ye S]]
-[[Category: Ion channel]]
-[[Category: Ion transport]]
-[[Category: Rossman fold]]
-[[Category: Transport]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  7 08:03:38 2010''