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| ==Function== | | ==Function== |
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| [[Ferredoxin]] (Fd) is found in chloroplasts which mediates electron transfer and contains an iron-sulfur cluster. It is involved in the photosynthesis process where its iron atoms accept or discharge electrons when they are being oxidized or reduced. The iron-sulfur cluster can contain 2Fe-2S and is termed plant-like or 3Fe-4S or 4Fe-4S clusters. '''Adrenodoxin''' (ADR) is a ferredoxin containing a 2Fe-2S group involved in electron transfer from NADPH+ to a cytochrome P-450 in the adrenal gland. '''Putidaredoxin''' (PUT) and '''terpredoxin''' (TER) are involved in the same reaction in bacteria and contain a 2Fe-2S group. | | [[Ferredoxin]] (Fd) is found in chloroplasts which mediates electron transfer and contains an iron-sulfur cluster. It is involved in the photosynthesis process where its iron atoms accept or discharge electrons when they are being oxidized or reduced. The iron-sulfur cluster can contain 2Fe-2S and is termed plant-like or 3Fe-4S or 4Fe-4S clusters. |
| | *'''Adrenodoxin''' (ADR) is a ferredoxin containing a 2Fe-2S group involved in electron transfer from NADPH+ to a cytochrome P-450 in the adrenal gland<ref>PMID:22556163</ref>.. |
| | *'''Putidaredoxin''' (PUT) and '''terpredoxin''' (TER) are involved in the same reaction in bacteria and contain a 2Fe-2S group<ref>PMID:10220356</ref>. |
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| ==D14C variant of ''Pyrococcus furiosus'' ferredoxin<ref>DOI 10.1007/s00775-011-0778-7</ref>== | | ==D14C variant of ''Pyrococcus furiosus'' ferredoxin<ref>DOI 10.1007/s00775-011-0778-7</ref>== |
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| </StructureSection> | | </StructureSection> |
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| ==3D structures of ferredoxin==
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| Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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| {{#tree:id=OrganizedByTopic|openlevels=0|
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| *2Fe-2S containing ferredoxins
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| **[[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br />
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| **[[3hui]], [[4ltu]] – Fd – ''Rhodopseudomonas palustris'' <br />
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| **[[1off]] – SyFd <br />
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| **[[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br />
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| **[[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br />
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| **[[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br />
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| **[[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br />
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| **[[2i7f]], [[1uwm]] - RcFd – ''Rhodobacter capsulatus'' <br />
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| **[[1e9m]] – RcFd - NMR<br />
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| **[[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br />
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| **[[1vck]] - Fd – ''Pseudomonas resinovorans'' <br />
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| **[[1wri]], [[1frr]] - Fd – E''quisetum arvense'' <br />
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| **[[1sjg]] - PmFd– NMR <br />
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| **[[1iue]] - Fd– ''Plasmodium falciparum'' <br />
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| **[[1m2a]] – AeFd – ''Aquifex aeolicu''s <br />
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| **[[1m2b]], [[1m2d]], [[1f37]], [[1f5b]], [[1f5c]] – AeFd (mutant) <br />
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| **[[1l5p]] – Fd – ''Trichomonas vaginali''s <br />
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| **[[1i7h]] - Fd – ''Escherichia coli'' <br />
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| **[[1czp]], [[1qt9]], [[1frd]], [[1fxa]] - aFd– ''anabaena'' <br />
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| **[[1j7a]], [[1j7b]], [[1j7c]] , [[1qoa]], [[1qob]], [[1qof]], [[1qog]]- aFd (mutant) <br />
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| **[[1e0z]] – Fd – ''Halobacterium salinarium'' <br />
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| **[[1e10]] - Fd – ''Halobacterium halobium''<br />
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| **[[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br />
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| **[[1a70]] - Fd (mutant) – ''Spinacia oleracea'' <br />
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| **[[1awd]] - Fd – ''Chlorella fusca'' <br />
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| **[[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br />
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| **[[1rof]], [[5aui]], [[5auk]] – SyFd – ''Synechococcus elongates'' <br />
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| **[[1doi]] - Fd – ''Haloarcula marismortui'' <br />
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| **[[4fxc]] – Fd – ''Spirulina platensi''s <br />
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| **[[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br />
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| **[[3dqy]], [[2qpz]], [[3ah7]] - Fd – ''Pseudomonas putida'' <br />
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| **[[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br />
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| **[[3b2f]], [[5h57]] – mFd – maize<br />
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| **[[3w5u]], [[3w5v]], [[1gaq]], [[5h5j]] – mFd + ferredoxin-NADP reductase<br />
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| **[[5h92]], [[5h8y]] – mFd + sulfite reductase<br />
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| **[[3b2g]] – Fd – ''Leptolyngbya boryana''<br />
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| **[[2mh7]] – Fd – ''Chlamydomonas reinhardtii''<br />
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| **[[1ewy]] – Fd + ferredoxin-NADP reductase - ''Nostoc''<br />
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| **[[5ffi]], [[5abr]] - AvFd – ''Azotobacter vinelandii''<br />
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| **[[5bok]] - Fd – ''Diaphorobacter''<br />
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| **[[4zhp]] - Fd – potato<br />
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| **[[4zho]] – AtFd-2 – ''Arabidopsis thaliana''<br />
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| **[[6b03]], [[6b05]], [[6brs]] – AtFd-2 + zinc protease<br />
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| **[[6e6s]], [[6e6r]], [[6e6q]] – PaFd (mutant)_- ''Pseudomonas aeruginosa''<br />
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| *4Fe-4S containing ferredoxins
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| **[[3eun]] – AvFd – ''Allochromatium vinosum'' <br />
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| **[[3exy]] - AvFd (mutant) <br />
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| **[[2vkr]] - Fd+Zn – ''Acidianus ambivalens'' <br />
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| **[[2z8q]] - PfFd (mutant) – ''Pyrococcus furiosus'' <br />
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| **[[1siz]] - PfFd<br >
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| **[[3pni]] - PfFd (mutant)<br />
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| **[[2fgo]] - PaFd <br />
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| **[[1iqz]], [[1ir0]] - BtFd – ''Bacillus thermoproteolyticus'' <br />
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| **[[1rgv]] - Fd – ''Thauera aromatica'' <br />
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| **[[1dax]], [[1dfd]] – DaFd – ''Desulfovibrio africanus'' – NMR <br />
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| **[[1fxr]] - DaFd <br />
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| **[[1vjw]] – Fd – ''Thermotoga maritima'' <br />
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| **[[1dwl]] – Fd – ''Desulfomicrobium norvegicum''<br />
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| *3Fe-4S containing ferredoxins
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| **[[2v2k]] – Fd – ''Mycobacterium smegmatis'' <br />
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| **[[1wtf]] - BtFd (mutant) <br />
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| **[[1sj1]] - PfFd <br />
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| **[[1fxd]] - DgFd – ''Desulfovibrio gigas'' <br />
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| **[[1f2g]] – DgFd – NMR <br />
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| **[[1xer]] - Fd – ''Sulfolobus tokodaii'' <br />
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| *4Fe-4S+3Fe-4S containing ferredoxins
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| **[[1gao]], [[6fdr]], [[7fd1]], [[7fdr]], [[1axq]], [[6fd1]], [[1frh]], [[1fri]],[[1frj]], [[1frk]], [[1frl]], [[1frm]], [[1fda]], [[1fdb]], [[1fdd]], [[5fd1]], [[1fer]] – AvFd – ''Azotobacter vinelandii'' <br />
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| **[[1pc4]], [[1pc5]], [[1g6b]], [[1g3o]], [[1ff2]], [[1b0v]], [[1d3w]], [[1b0t]], [[1a6l]], [[1ftc]], [[1frx]], [[2fd2]], [[1fd2]] - AvFd (mutant) <br />
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| **[[1h98]] – Fd – ''Thermus thermophilus'' <br />
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| **[[1a8p]], [[1bd6]], [[1bc6]] - BsFd – ''Bacillus schlegelii'' – NMR <br />
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| *4Fe-4S+4Fe-4S containing ferredoxins
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| **[[1dur]] – Fd – ''Peptoniphilus asaccarolyticus'' <br />
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| **[[1bwe]], [[1bqx]] - BsFd (mutant) – NMR <br />
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| **[[2fdn]], [[1fca]] , [[1fdn]] - Fd – ''Clostridium acidi-urici'' <br />
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| **[[1blu]] - Fd – ''Chromatium vinosum'' <br />
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| **[[1clf]] – Fd – ''Clostridium pasteurianum'' – NMR <br />
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| *Adrenoredoxin
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| **[[2mjd]], [[2mje]] – yADR – yeast<br />
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| **[[2jqr]] – yADR Fd domain (mutant)+cytochrome c (mutant) – NMR <br />
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| **[[2bt6]] – cADR1 modified – cow <br />
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| **[[1l6u]], [[1l6v]] – cADR1 – NMR <br />
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| **[[1e6e]] – cADR (mutant)+ADR reductase <br />
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| **[[1cje]], [[1ayf]] - cADR <br />
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| **[[3na0]], [[3n9y]], [[3n9z]], [[3na1]] - hADR +cholesterol side-chain cleavage enzyme – human<br />
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| **[[3p1m]] - hADR<br />
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| **[[5uj5]] – ADR – ''Encephalitozoon cuniculi''<br />
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| *Putidaredoxin
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| **[[1yji]], [[1yjj]], [[1pdx]] – PpPUT – NMR <br />
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| **[[3lb8]] – PpPUT (mutant)+PUT reductase <br />
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| **[[1xln]], [[1xlo]], [[1xlp]], [[1xlq]], [[1r7s]], [[1oqq]], [[1oqr]] - PpPUT (mutant) <br />
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| **[[1gpx]], [[1put]]- PpPUT (mutant) - NMR <br />
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| **[[4jws]] - PpPUT + cytochrome P450cam<br />
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| **[[3w9c]], [[4jwu]] - PpPUT (mutant) + cytochrome P450cam<br />
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| **[[2m56]] - PpPUT (mutant) + cytochrome P450cam - NMR<br />
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| **[[4jx1]] - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor<br />
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| *Terpredoxin
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| **[[1b9r]] – TER – ''Pseudomonas'' - NMR <br />
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| }}
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| ==References== | | ==References== |
| <references/> | | <references/> |