3mi6: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:3mi6.jpg|left|200px]]
-<!--
+==Crystal structure of the alpha-galactosidase from Lactobacillus brevis, Northeast Structural Genomics Consortium Target LbR11.==
-The line below this paragraph, containing "STRUCTURE_3mi6", creates the "Structure Box" on the page.
+<StructureSection load='3mi6' size='340' side='right'caption='[[3mi6]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3mi6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Levilactobacillus_brevis_ATCC_367 Levilactobacillus brevis ATCC 367]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MI6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MI6 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.704&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3mi6|  PDB=3mi6  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mi6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mi6 OCA], [https://pdbe.org/3mi6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mi6 RCSB], [https://www.ebi.ac.uk/pdbsum/3mi6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mi6 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q03PP7_LEVBA Q03PP7_LEVBA]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mi/3mi6_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mi6 ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of the alpha-galactosidase from Lactobacillus brevis, Northeast Structural Genomics Consortium Target LbR11.===
+==See Also==
+*[[Galactosidase 3D structures|Galactosidase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-MI6 is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Lactobacillus_brevis Lactobacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MI6 OCA].
+[[Category: Large Structures]]
-[[Category: Alpha-galactosidase]]
+[[Category: Levilactobacillus brevis ATCC 367]]
-[[Category: Lactobacillus brevis]]
+[[Category: Acton TB]]
-[[Category: Acton, T B.]]
+[[Category: Belote R]]
-[[Category: Belote, R.]]
+[[Category: Chen Y]]
-[[Category: Chen, Y.]]
+[[Category: Everett JK]]
-[[Category: Everett, J K.]]
+[[Category: Hunt JF]]
-[[Category: Hunt, J F.]]
+[[Category: Montelione GT]]
-[[Category: Montelione, G T.]]
+[[Category: Sahdev S]]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+[[Category: Seetharaman J]]
-[[Category: Sahdev, S.]]
+[[Category: Tong L]]
-[[Category: Seetharaman, J.]]
+[[Category: Vorobiev S]]
-[[Category: Tong, L.]]
+[[Category: Xiao R]]
-[[Category: Vorobiev, S.]]
-[[Category: Xiao, R.]]
-[[Category: Hydrolase]]
-[[Category: Nesg]]
-[[Category: Northeast structural genomics consortium]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 28 11:11:54 2010''