3mdn: Difference between revisions

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-{{Seed}}
-[[Image:3mdn.jpg|left|200px]]
-<!--
+==Structure of glutamine aminotransferase class-II domain protein (SPO2029) from silicibacter pomeroyi==
-The line below this paragraph, containing "STRUCTURE_3mdn", creates the "Structure Box" on the page.
+<StructureSection load='3mdn' size='340' side='right'caption='[[3mdn]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3mdn]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MDN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3mdn|  PDB=3mdn  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mdn OCA], [https://pdbe.org/3mdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mdn RCSB], [https://www.ebi.ac.uk/pdbsum/3mdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mdn ProSAT]</span></td></tr>
+</table>
-===Structure of glutamine amidotransferases class-II domain protein (SPO2029) from silicibacter pomeroyi===
+== Function ==
+[https://www.uniprot.org/uniprot/Q5LRU5_RUEPO Q5LRU5_RUEPO]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-MDN is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDN OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3mdn_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mdn ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Ruegeria pomeroyi]]
-[[Category: Almo, S C.]]
+[[Category: Almo SC]]
-[[Category: Burley, S K.]]
+[[Category: Burley SK]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Ramagopal UA]]
-[[Category: Ramagopal, U A.]]
+[[Category: Toro R]]
-[[Category: Toro, R.]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 11:25:04 2010''