3ma6: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Crystal structure of kinase domain of TgCDPK1 in presence of 3BrB-PP1==
-<StructureSection load='3ma6' size='340' side='right' caption='[[3ma6]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+<StructureSection load='3ma6' size='340' side='right'caption='[[3ma6]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3ma6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Toxgo Toxgo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MA6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MA6 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3ma6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MA6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MA6 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DXR:3-(3-BROMOBENZYL)-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE'>DXR</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CDPK1, TGME49_101440 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5811 TOXGO])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DXR:3-(3-BROMOBENZYL)-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE'>DXR</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ma6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ma6 OCA], [http://pdbe.org/3ma6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ma6 RCSB], [http://www.ebi.ac.uk/pdbsum/3ma6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ma6 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ma6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ma6 OCA], [https://pdbe.org/3ma6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ma6 RCSB], [https://www.ebi.ac.uk/pdbsum/3ma6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ma6 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9BJF5_TOXGO Q9BJF5_TOXGO]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ma/3ma6_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ma/3ma6_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 20: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Toxgo]]
+[[Category: Large Structures]]
-[[Category: Amani, M]]
+[[Category: Toxoplasma gondii]]
-[[Category: Arrowsmith, C H]]
+[[Category: Amani M]]
-[[Category: Artz, J D]]
+[[Category: Arrowsmith CH]]
-[[Category: Bochkarev, A]]
+[[Category: Artz JD]]
-[[Category: Bountra, C]]
+[[Category: Bochkarev A]]
-[[Category: Edwards, A M]]
+[[Category: Bountra C]]
-[[Category: Hassani, A A]]
+[[Category: Edwards AM]]
-[[Category: Hui, R]]
+[[Category: Hassani AA]]
-[[Category: Lin, Y H]]
+[[Category: Hui R]]
-[[Category: Lourido, S]]
+[[Category: Lin YH]]
-[[Category: Qiu, W]]
+[[Category: Lourido S]]
-[[Category: Structural genomic]]
+[[Category: Qiu W]]
-[[Category: Senisterra, G]]
+[[Category: Senisterra G]]
-[[Category: Shokat, K]]
+[[Category: Shokat K]]
-[[Category: Sibley, L D]]
+[[Category: Sibley LD]]
-[[Category: Vedadi, M]]
+[[Category: Vedadi M]]
-[[Category: Weigelt, J]]
+[[Category: Weigelt J]]
-[[Category: Wernimont, A K]]
+[[Category: Wernimont AK]]
-[[Category: Zhang, C]]
+[[Category: Zhang C]]
-[[Category: Atp-binding]]
-[[Category: Cdpk]]
-[[Category: Kinase]]
-[[Category: Nucleotide-binding]]
-[[Category: Parasitology]]
-[[Category: Serine/threonine-protein kinase]]
-[[Category: Sgc]]
-[[Category: Transferase]]