3lzk: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
Line 1: Line 1:


==The crystal structure of a probably aromatic amino acid degradation proteiN from Sinorhizobium meliloti 1021==
==The crystal structure of a probably aromatic amino acid degradation proteiN from Sinorhizobium meliloti 1021==
<StructureSection load='3lzk' size='340' side='right' caption='[[3lzk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='3lzk' size='340' side='right'caption='[[3lzk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3lzk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_9930 Atcc 9930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LZK FirstGlance]. <br>
<table><tr><td colspan='2'>[[3lzk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LZK FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">R02938, SMc03207 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 ATCC 9930])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lzk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzk OCA], [https://pdbe.org/3lzk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lzk RCSB], [https://www.ebi.ac.uk/pdbsum/3lzk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzk ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lzk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzk OCA], [http://pdbe.org/3lzk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lzk RCSB], [http://www.ebi.ac.uk/pdbsum/3lzk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzk ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 14: Line 13:
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lz/3lzk_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lz/3lzk_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
Line 21: Line 20:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 9930]]
[[Category: Large Structures]]
[[Category: Cui, H]]
[[Category: Sinorhizobium meliloti]]
[[Category: Edwards, A]]
[[Category: Cui H]]
[[Category: Joachimiak, A]]
[[Category: Edwards A]]
[[Category: Structural genomic]]
[[Category: Joachimiak A]]
[[Category: Savchenko, A]]
[[Category: Savchenko A]]
[[Category: Tan, K]]
[[Category: Tan K]]
[[Category: Xu, X]]
[[Category: Xu X]]
[[Category: Hydrolase]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]

Latest revision as of 05:06, 21 November 2024

The crystal structure of a probably aromatic amino acid degradation proteiN from Sinorhizobium meliloti 1021The crystal structure of a probably aromatic amino acid degradation proteiN from Sinorhizobium meliloti 1021

Structural highlights

3lzk is a 4 chain structure with sequence from Sinorhizobium meliloti. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3lzk, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA