3lv4: Difference between revisions

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-{{STRUCTURE_3lv4|  PDB=3lv4  |  SCENE=  }}
-===Crystal structure of the glycoside hydrolase, family 43 YxiA protein from Bacillus licheniformis. Northeast Structural Genomics Consortium Target BiR14.===
-==About this Structure==
+==Crystal structure of the glycoside hydrolase, family 43 YxiA protein from Bacillus licheniformis. Northeast Structural Genomics Consortium Target BiR14.==
-[[3lv4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_licheniformis Bacillus licheniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LV4 OCA].
+<StructureSection load='3lv4' size='340' side='right'caption='[[3lv4]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-[[Category: Bacillus licheniformis]]
+== Structural highlights ==
-[[Category: Abashidze, M.]]
+<table><tr><td colspan='2'>[[3lv4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_licheniformis_DSM_13_=_ATCC_14580 Bacillus licheniformis DSM 13 = ATCC 14580]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LV4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LV4 FirstGlance]. <br>
-[[Category: Acton, T B.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.695&#8491;</td></tr>
-[[Category: Belote, RL.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Ciccosanti, C.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lv4 OCA], [https://pdbe.org/3lv4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lv4 RCSB], [https://www.ebi.ac.uk/pdbsum/3lv4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lv4 ProSAT]</span></td></tr>
-[[Category: Everett, J K.]]
+</table>
-[[Category: Hunt, J F.]]
+== Function ==
-[[Category: Montelione, G T.]]
+[https://www.uniprot.org/uniprot/Q65D31_BACLD Q65D31_BACLD]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+== Evolutionary Conservation ==
-[[Category: Sahdev, S.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Seetharaman, J.]]
+Check<jmol>
-[[Category: Tong, L.]]
+  <jmolCheckbox>
-[[Category: Vorobiev, S.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lv/3lv4_consurf.spt"</scriptWhenChecked>
-[[Category: Xiao, R.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: 5-alpha-l-arabinosidase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Glycoside hydrolase]]
+  </jmolCheckbox>
-[[Category: Hydrolase]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lv4 ConSurf].
-[[Category: Nesg]]
+<div style="clear:both"></div>
-[[Category: Northeast structural genomics consortium]]
+__TOC__
-[[Category: Protein structure initiative]]
+</StructureSection>
-[[Category: Psi-2]]
+[[Category: Bacillus licheniformis DSM 13 = ATCC 14580]]
-[[Category: Similar to arabinan endo-1]]
+[[Category: Large Structures]]
-[[Category: Structural genomic]]
+[[Category: Abashidze M]]
+[[Category: Acton TB]]
+[[Category: Belote RL]]
+[[Category: Ciccosanti C]]
+[[Category: Everett JK]]
+[[Category: Hunt JF]]
+[[Category: Montelione GT]]
+[[Category: Sahdev S]]
+[[Category: Seetharaman J]]
+[[Category: Tong L]]
+[[Category: Vorobiev S]]
+[[Category: Xiao R]]