3lbg: Difference between revisions

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OCA

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 ==Urate oxidase complexed with 8-thio xanthine==
-<StructureSection load='3lbg' size='340' side='right' caption='[[3lbg]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+<StructureSection load='3lbg' size='340' side='right'caption='[[3lbg]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3lbg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspfl Aspfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LBG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LBG FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3lbg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LBG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LBG FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8TX:8-THIOXO-3,7,8,9-TETRAHYDRO-1H-PURINE-2,6-DIONE'>8TX</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8TX:8-THIOXO-3,7,8,9-TETRAHYDRO-1H-PURINE-2,6-DIONE'>8TX</scene>, <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1r51|1r51]], [[3l8w|3l8w]], [[3l9g|3l9g]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lbg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lbg OCA], [https://pdbe.org/3lbg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lbg RCSB], [https://www.ebi.ac.uk/pdbsum/3lbg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lbg ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Factor_independent_urate_hydroxylase Factor independent urate hydroxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.3 1.7.3.3] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lbg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lbg OCA], [http://pdbe.org/3lbg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lbg RCSB], [http://www.ebi.ac.uk/pdbsum/3lbg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lbg ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL]] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
+[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 17: / Line 15: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lb/3lbg_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 33: / Line 31: @@
 ==See Also==
-*[[Urate Oxidase|Urate Oxidase]]
+*[[Urate oxidase 3D structures|Urate oxidase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Aspfl]]
-[[Category: Factor independent urate hydroxylase]]
-[[Category: Gabison, L]]
-[[Category: Prange, T]]
-[[Category: H, N Colloc]]
-[[Category: 8-thioxanthine]]
 [[Category: Aspergillus flavus]]
-[[Category: High resolution]]
+[[Category: Large Structures]]
-[[Category: Nitroxanthine]]
+[[Category: Colloc'h N]]
-[[Category: Oxidoreductase]]
+[[Category: Gabison L]]
-[[Category: Peroxisome]]
+[[Category: Prange T]]
-[[Category: Purine metabolism]]
-[[Category: Urate oxidase]]
-[[Category: Xanthine]]