3kux: Difference between revisions

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==Structure of the YPO2259 putative oxidoreductase from Yersinia pestis==
==Structure of the YPO2259 putative oxidoreductase from Yersinia pestis==
<StructureSection load='3kux' size='340' side='right' caption='[[3kux]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
<StructureSection load='3kux' size='340' side='right'caption='[[3kux]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3kux]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus pestis" (lehmann and neumann 1896) migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KUX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KUX FirstGlance]. <br>
<table><tr><td colspan='2'>[[3kux]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KUX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KUX FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mviM4, y2101, YPO2259, YP_2055 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kux FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kux OCA], [https://pdbe.org/3kux PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kux RCSB], [https://www.ebi.ac.uk/pdbsum/3kux PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kux ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kux FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kux OCA], [http://pdbe.org/3kux PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kux RCSB], [http://www.ebi.ac.uk/pdbsum/3kux PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kux ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0A2S9PM40_YERPE A0A2S9PM40_YERPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ku/3kux_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ku/3kux_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Anderson, S M]]
[[Category: Large Structures]]
[[Category: Anderson, W F]]
[[Category: Yersinia pestis]]
[[Category: Anderson SM]]
[[Category: Anderson WF]]
[[Category: Structural genomic]]
[[Category: Structural genomic]]
[[Category: Edwards, A]]
[[Category: Edwards A]]
[[Category: Gordon, E]]
[[Category: Gordon E]]
[[Category: Kwon, K]]
[[Category: Kwon K]]
[[Category: Savchenko, A]]
[[Category: Savchenko A]]
[[Category: Wawrzak, Z]]
[[Category: Wawrzak Z]]
[[Category: Csgid]]
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase family]]

Latest revision as of 08:57, 17 October 2024

Structure of the YPO2259 putative oxidoreductase from Yersinia pestisStructure of the YPO2259 putative oxidoreductase from Yersinia pestis

Structural highlights

3kux is a 1 chain structure with sequence from Yersinia pestis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.75Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A2S9PM40_YERPE

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3kux, resolution 2.75Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA