3k84: Difference between revisions

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 ==Crystal Structure Analysis of a Oleyl/Oxadiazole/pyridine Inhibitor Bound to a Humanized Variant of Fatty Acid Amide Hydrolase==
-<StructureSection load='3k84' size='340' side='right' caption='[[3k84]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+<StructureSection load='3k84' size='340' side='right'caption='[[3k84]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3k84]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K84 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3k84]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K84 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K84:(9Z)-1-(5-PYRIDIN-2-YL-1,3,4-OXADIAZOL-2-YL)OCTADEC-9-EN-1-ONE'>K84</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2wj1|2wj1]], [[2wj2|2wj2]], [[3k7f|3k7f]], [[3k83|3k83]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K84:(9Z)-1-(5-PYRIDIN-2-YL-1,3,4-OXADIAZOL-2-YL)OCTADEC-9-EN-1-ONE'>K84</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Faah, faah-1, Faah1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k84 OCA], [https://pdbe.org/3k84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k84 RCSB], [https://www.ebi.ac.uk/pdbsum/3k84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k84 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k84 OCA], [http://pdbe.org/3k84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k84 RCSB], [http://www.ebi.ac.uk/pdbsum/3k84 PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/FAAH1_RAT FAAH1_RAT]] Degrades bioactive fatty acid amides like oleamide, the endogenous cannabinoid, anandamide and myristic amide to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Hydrolyzes polyunsaturated substrate anandamide preferentially as compared to monounsaturated substrates (By similarity).
+[https://www.uniprot.org/uniprot/FAAH1_RAT FAAH1_RAT] Degrades bioactive fatty acid amides like oleamide, the endogenous cannabinoid, anandamide and myristic amide to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Hydrolyzes polyunsaturated substrate anandamide preferentially as compared to monounsaturated substrates (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k8/3k84_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k8/3k84_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 36: / Line 36: @@
 __TOC__
 </StructureSection>
-[[Category: Buffalo rat]]
+[[Category: Large Structures]]
-[[Category: Boger, D L]]
+[[Category: Rattus norvegicus]]
-[[Category: Mileni, M]]
+[[Category: Boger DL]]
-[[Category: Stevens, R C]]
+[[Category: Mileni M]]
-[[Category: Alpha-ketoheterocycle]]
+[[Category: Stevens RC]]
-[[Category: Conjugate]]
-[[Category: Covalent modification]]
-[[Category: Endocannabinoid]]
-[[Category: Faah]]
-[[Category: Fatty acid]]
-[[Category: Hydrolase]]
-[[Category: Membrane]]
-[[Category: Monotopic]]
-[[Category: Oxadiazole]]
-[[Category: Oxazole]]
-[[Category: Reversible inhibitor]]
-[[Category: Serine hydrolase]]
-[[Category: Transmembrane]]