3iwb: Difference between revisions

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-{{Seed}}
-[[Image:3iwb.jpg|left|200px]]
-<!--
+==T. maritima AdoMetDC in processed form==
-The line below this paragraph, containing "STRUCTURE_3iwb", creates the "Structure Box" on the page.
+<StructureSection load='3iwb' size='340' side='right'caption='[[3iwb]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3iwb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IWB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IWB FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-{{STRUCTURE_3iwb|  PDB=3iwb  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iwb OCA], [https://pdbe.org/3iwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iwb RCSB], [https://www.ebi.ac.uk/pdbsum/3iwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iwb ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SPEH_THEMA SPEH_THEMA]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iw/3iwb_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iwb ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The polyamines putrescine, spermidine and spermine are ubiquitous aliphatic cations and are essential for cellular growth and differentiation. S-Adenosylmethionine decarboxylase (AdoMetDC) is a critical pyruvoyl-dependent enzyme in the polyamine-biosynthetic pathway. The crystal structures of AdoMetDC from humans and plants and of the AdoMetDC proenzyme from Thermotoga maritima have been obtained previously. Here, the crystal structures of activated T. maritima AdoMetDC (TmAdoMetDC) and of its complexes with S-adenosylmethionine methyl ester and 5'-deoxy-5'-dimethylthioadenosine are reported. The results demonstrate for the first time that TmAdoMetDC autoprocesses without the need for additional factors and that the enzyme contains two complete active sites, both of which use residues from both chains of the homodimer. The complexes provide insights into the substrate specificity and ligand binding of AdoMetDC in prokaryotes. The conservation of the ligand-binding mode and the active-site residues between human and T. maritima AdoMetDC provides insight into the evolution of AdoMetDC.
-===T. maritima AdoMetDC in processed form===
+Complexes of Thermotoga maritimaS-adenosylmethionine decarboxylase provide insights into substrate specificity.,Bale S, Baba K, McCloskey DE, Pegg AE, Ealick SE Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):181-9. Epub 2010, Jan 22. PMID:20124698<ref>PMID:20124698</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3iwb" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-IWB is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IWB OCA].
+*[[SAM decarboxylase|SAM decarboxylase]]
-[[Category: Adenosylmethionine decarboxylase]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: Bale, S.]]
+[[Category: Bale S]]
-[[Category: Ealick, S E.]]
+[[Category: Ealick SE]]
-[[Category: Kavita, B.]]
+[[Category: Kavita B]]
-[[Category: Autocatalytic cleavage]]
-[[Category: Decarboxylase]]
-[[Category: Lyase]]
-[[Category: Polyamine biosynthesis]]
-[[Category: Pyruvate]]
-[[Category: S-adenosyl-l-methionine]]
-[[Category: Schiff base]]
-[[Category: Spermidine biosynthesis]]
-[[Category: Zymogen]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 10 17:55:31 2010''