3ivd: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
m Protected "3ivd" [edit=sysop:move=sysop]
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{STRUCTURE_3ivd|  PDB=3ivd  |  SCENE=  }}
===Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine===


==About this Structure==
==Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine==
[[3ivd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IVD OCA].  
<StructureSection load='3ivd' size='340' side='right'caption='[[3ivd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
[[Category: Escherichia coli o6]]
== Structural highlights ==
[[Category: Almo, S C.]]
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IVD FirstGlance]. <br>
[[Category: Burley, S K.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=URI:URIDINE'>URI</scene></td></tr>
[[Category: Ramagopal, U A.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ivd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ivd OCA], [https://pdbe.org/3ivd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ivd RCSB], [https://www.ebi.ac.uk/pdbsum/3ivd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ivd ProSAT]</span></td></tr>
[[Category: Toro, R.]]
</table>
[[Category: Hydrolase]]
== Evolutionary Conservation ==
[[Category: New york sgx research center for structural genomic]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Nucleotidase]]
Check<jmol>
[[Category: Nysgxrc]]
  <jmolCheckbox>
[[Category: Protein structure initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iv/3ivd_consurf.spt"</scriptWhenChecked>
[[Category: Psi-2]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Structural genomic]]
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ivd ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Almo SC]]
[[Category: Burley SK]]
[[Category: Ramagopal UA]]
[[Category: Toro R]]

Latest revision as of 13:02, 6 November 2024

Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with UridinePutative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3ivd, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA