3idd: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:


==Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728==
==Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728==
<StructureSection load='3idd' size='340' side='right' caption='[[3idd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='3idd' size='340' side='right'caption='[[3idd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IDD FirstGlance]. <br>
<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IDD FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [https://pdbe.org/3idd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [https://www.ebi.ac.uk/pdbsum/3idd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3idd ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://pdbe.org/3idd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3idd ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC]] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).  
[https://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 16: Line 15:
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idd_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idd_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
Line 23: Line 22:


==See Also==
==See Also==
*[[Phosphoglycerate Mutase|Phosphoglycerate Mutase]]
*[[Phosphoglycerate mutase 3D structures|Phosphoglycerate mutase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Phosphoglycerate mutase]]
[[Category: Large Structures]]
[[Category: Buck, K]]
[[Category: Thermoplasma acidophilum]]
[[Category: Duke, N E.C]]
[[Category: Buck K]]
[[Category: Joachimiak, A]]
[[Category: Duke NEC]]
[[Category: Structural genomic]]
[[Category: Joachimiak A]]
[[Category: Marshall, N]]
[[Category: Marshall N]]
[[Category: Glycolysis]]
[[Category: Isomerase]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]

Latest revision as of 04:56, 21 November 2024

Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728

Structural highlights

3idd is a 2 chain structure with sequence from Thermoplasma acidophilum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.8Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

APGM_THEAC Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3idd, resolution 2.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3idd&oldid=4208247"