2kli: Difference between revisions

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-[[Image:2kli.png|left|200px]]
-{{STRUCTURE_2kli|  PDB=2kli  |  SCENE=  }}
+==Structural Basis for the Photoconversion of A Phytochrome to the Activated FAR-RED LIGHT-ABSORBING Form==
+<StructureSection load='2kli' size='340' side='right'caption='[[2kli]]' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2kli]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_sp._JA-2-3B'a(2-13) Synechococcus sp. JA-2-3B'a(2-13)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KLI FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kli OCA], [https://pdbe.org/2kli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kli RCSB], [https://www.ebi.ac.uk/pdbsum/2kli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kli ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q2JIZ5_SYNJB Q2JIZ5_SYNJB]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kl/2kli_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kli ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Phytochromes are a collection of bilin-containing photoreceptors that regulate numerous photoresponses in plants and microorganisms through their ability to photointerconvert between a red-light-absorbing, ground state (Pr) and a far-red-light-absorbing, photoactivated state (Pfr). Although the structures of several phytochromes as Pr have been determined, little is known about the structure of Pfr and how it initiates signalling. Here we describe the three-dimensional solution structure of the bilin-binding domain as Pfr, using the cyanobacterial phytochrome from Synechococcus OSB'. Contrary to predictions, light-induced rotation of the A pyrrole ring but not the D ring is the primary motion of the chromophore during photoconversion. Subsequent rearrangements within the protein then affect intradomain and interdomain contact sites within the phytochrome dimer. On the basis of our models, we propose that phytochromes act by propagating reversible light-driven conformational changes in the bilin to altered contacts between the adjacent output domains, which in most phytochromes direct differential phosphotransfer.
-===Structural Basis for the Photoconversion of A Phytochrome to the Activated FAR-RED LIGHT-ABSORBING Form===
+Structural basis for the photoconversion of a phytochrome to the activated Pfr form.,Ulijasz AT, Cornilescu G, Cornilescu CC, Zhang J, Rivera M, Markley JL, Vierstra RD Nature. 2010 Jan 14;463(7278):250-4. PMID:20075921<ref>PMID:20075921</ref>
-{{ABSTRACT_PUBMED_20075921}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-==About this Structure==
+<div class="pdbe-citations 2kli" style="background-color:#fffaf0;"></div>
-[[2kli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_sp._ja-2-3b'a(2-13) Synechococcus sp. ja-2-3b'a(2-13)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KLI OCA].
+== References ==
+<references/>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:020075921</ref><references group="xtra"/>
+</StructureSection>
-[[Category: Histidine kinase]]
+[[Category: Large Structures]]
-[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+[[Category: Cornilescu CC]]
-[[Category: Cornilescu, C C.]]
+[[Category: Cornilescu G]]
-[[Category: Cornilescu, G.]]
+[[Category: Markley JL]]
-[[Category: Markley, J L.]]
+[[Category: Rivera M]]
-[[Category: Rivera, M.]]
+[[Category: Ulijasz AT]]
-[[Category: Ulijasz, A T.]]
+[[Category: Vierstra RD]]
-[[Category: Vierstra, R D.]]
+[[Category: Zhang J]]
-[[Category: Zhang, J.]]
-[[Category: Center for eukaryotic structural genomic]]
-[[Category: Cesg]]
-[[Category: Kinase]]
-[[Category: Phosphoprotein]]
-[[Category: Phytochrome]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]