3h7c: Difference between revisions

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[[Image:3h7c.png|left|200px]]


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==Crystal Structure of Arabidopsis thaliana Agmatine Deiminase from Cell Free Expression==
The line below this paragraph, containing "STRUCTURE_3h7c", creates the "Structure Box" on the page.
<StructureSection load='3h7c' size='340' side='right'caption='[[3h7c]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3h7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H7C FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=211:2,2,2-NITRILOTRIETHANOL'>211</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_3h7c|  PDB=3h7c  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h7c OCA], [https://pdbe.org/3h7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h7c RCSB], [https://www.ebi.ac.uk/pdbsum/3h7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h7c ProSAT], [https://www.topsan.org/Proteins/CESG/3h7c TOPSAN]</span></td></tr>
 
</table>
===Crystal Structure of Arabidopsis thaliana Agmatine Deiminase from Cell Free Expression===
== Function ==
 
[https://www.uniprot.org/uniprot/AGUA_ARATH AGUA_ARATH] Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3H7C is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H7C OCA].  
Check<jmol>
[[Category: Agmatine deiminase]]
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h7/3h7c_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h7c ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Bingman, C A.]]
[[Category: Large Structures]]
[[Category: Burgie, E S.]]
[[Category: Bingman CA]]
[[Category: CHTSB, Center for High-Throughput Structural Biology.]]
[[Category: Burgie ES]]
[[Category: Jr., G N.Phillips.]]
[[Category: Phillips Jr GN]]
[[Category: Agmatine]]
[[Category: Arginine decarboxylase pathway]]
[[Category: Center for eukaryotic structural genomic]]
[[Category: Center for high-throughput structural biology]]
[[Category: Cesg]]
[[Category: Chtsb]]
[[Category: Hydrolase]]
[[Category: N-carbamoylputrescine]]
[[Category: Polyamine biosynthesis]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:23:29 2009''

Latest revision as of 12:56, 6 November 2024

Crystal Structure of Arabidopsis thaliana Agmatine Deiminase from Cell Free ExpressionCrystal Structure of Arabidopsis thaliana Agmatine Deiminase from Cell Free Expression

Structural highlights

3h7c is a 1 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.5Å
Ligands:, , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

AGUA_ARATH Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3h7c, resolution 1.50Å

Drag the structure with the mouse to rotate

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