3gyk: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 3gyk is ON HOLD
+==The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3==
+<StructureSection load='3gyk' size='340' side='right'caption='[[3gyk]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
-Authors: Fan, Y., Marshall, N., Keigher, L., Joachimiak, A., Midwest Center for Structural Genmonics (MCSG), Midwest Center for Structural Genomics (MCSG)
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3gyk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi_DSS-3 Ruegeria pomeroyi DSS-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GYK FirstGlance]. <br>
-Description: The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 15 09:59:57 2009''
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gyk OCA], [https://pdbe.org/3gyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gyk RCSB], [https://www.ebi.ac.uk/pdbsum/3gyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gyk ProSAT], [https://www.topsan.org/Proteins/MCSG/3gyk TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/3gyk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gyk ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Ruegeria pomeroyi DSS-3]]
+[[Category: Fan Y]]
+[[Category: Joachimiak A]]
+[[Category: Keigher L]]
+[[Category: Marshall N]]